PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G38560.4

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 827aa MW: 91665.7 Da PI: 5.0726

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G38560.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.8	2.9e-34	656	710	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++hvkSHLQkYR+ ORUFI02G38560.4 656 KPRMRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVDGLTIYHVKSHLQKYRT 710 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11107	1.2E-46	10	220	No hit	No description
Pfam	PF11107	1.9E-18	227	356	No hit	No description
PROSITE profile	PS51294	13.029	653	717	IPR017930	Myb domain
SuperFamily	SSF46689	7.53E-18	653	711	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-31	655	711	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-25	656	710	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-10	658	709	IPR001005	SANT/Myb domain
Pfam	PF14379	4.2E-18	744	786	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MGWAHETVAM EELLGLVRGF VDVLVLAGGR TSSGAAATWR SGDVKKALQW ALFFEEVFKN 60 LRDDGQYDES ASELDAALVQ LASSPNFPKG IEDIRSKTLA MARELVVKHF LKTTNAENLG 120 AVLQAVVEMD MDGISASGEC NVCQEYVQSI LDMNLPSLMR TKNARDVGHS TSSDEFCEES 180 LFTGNSQILL KELQKKLDSG SCISLAEREL NTLLKSMKKD SFDSAGSTLC TSATAQKTQI 240 IDKFILWKQW KAKCLSYLLD ERTIRIMSGT NMIFNAPKEQ WMGLFEPLKV SADSSQSGII 300 EVMELCLLGL VARQWNSLIE SIMSHTFSSF PISKQYADLH QLLQGTTQDE CQDKLLGFKE 360 MDICEYARQS LESEPYILWL LPPVLTAAAM PPRSSLFKIY LVEIDKQLGE AASKDRPTST 420 MNQLRNGKVP QYLSPAITVV PELSEVTFPS FSEHRPSYIE REQCGSSINS FDASTPMCML 480 ASNFTSDLYI NKSESPNGKL SSESYAIDTS GCDSSLPPTQ SLYKGNPSSL RMVYPKVSEQ 540 NSWSQEPLPG PFVCPTSVDF FDQQDMTIFD QQIQDNIAAS PSTNLAKQNE WFSSGTSLQY 600 LESSVSAGSV LKAVDATSTT PSNYLHCHAQ RNTSNPPNFN EICSGNIASS NIAPTKPRMR 660 WTPELHERFV DAVNKLGGSE KATPKAVQKV MKVDGLTIYH VKSHLQKYRT VHHRPQLSDG 720 ESAKSGQTDE VSSQPLKGME TTCEGLRVQI GLQKQLHEQL EIQRKLQLQV EEHSKYLAMI 780 IEKQSESLRQ LGALPRSLDA PTQVLDNRET CEGQTGDADS AEQKPEK

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MGWAHETVAM EELLGLVRGF VDVLVLAGGR TSSGAAATWR SGDVKKALQW ALFFEEVFKN  60
LRDDGQYDES ASELDAALVQ LASSPNFPKG IEDIRSKTLA MARELVVKHF LKTTNAENLG  120
AVLQAVVEMD MDGISASGEC NVCQEYVQSI LDMNLPSLMR TKNARDVGHS TSSDEFCEES  180
LFTGNSQILL KELQKKLDSG SCISLAEREL NTLLKSMKKD SFDSAGSTLC TSATAQKTQI  240
IDKFILWKQW KAKCLSYLLD ERTIRIMSGT NMIFNAPKEQ WMGLFEPLKV SADSSQSGII  300
EVMELCLLGL VARQWNSLIE SIMSHTFSSF PISKQYADLH QLLQGTTQDE CQDKLLGFKE  360
MDICEYARQS LESEPYILWL LPPVLTAAAM PPRSSLFKIY LVEIDKQLGE AASKDRPTST  420
MNQLRNGKVP QYLSPAITVV PELSEVTFPS FSEHRPSYIE REQCGSSINS FDASTPMCML  480
ASNFTSDLYI NKSESPNGKL SSESYAIDTS GCDSSLPPTQ SLYKGNPSSL RMVYPKVSEQ  540
NSWSQEPLPG PFVCPTSVDF FDQQDMTIFD QQIQDNIAAS PSTNLAKQNE WFSSGTSLQY  600
LESSVSAGSV LKAVDATSTT PSNYLHCHAQ RNTSNPPNFN EICSGNIASS NIAPTKPRMR  660
WTPELHERFV DAVNKLGGSE KATPKAVQKV MKVDGLTIYH VKSHLQKYRT VHHRPQLSDG  720
ESAKSGQTDE VSSQPLKGME TTCEGLRVQI GLQKQLHEQL EIQRKLQLQV EEHSKYLAMI  780
IEKQSESLRQ LGALPRSLDA PTQVLDNRET CEGQTGDADS AEQKPEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-27	656	714	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-27	656	714	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-27	656	714	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-27	656	714	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-27	656	714	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-27	656	714	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-27	656	714	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-27	656	714	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066382	0.0	AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627299.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627301.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627302.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878774.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878775.1	0.0	uncharacterized protein LOC4331121
TrEMBL	A0A0E0NMQ8	0.0	A0A0E0NMQ8_ORYRU; Uncharacterized protein
STRING	ORUFI02G38560.3	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	1e-47	phosphate starvation response 1