PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G38560.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 855aa MW: 95006.5 Da PI: 5.0313 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 39.1 | 1.6e-12 | 656 | 680 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kpr+rWtpeLHerFv+av++LGGse ORUFI02G38560.3 656 KPRMRWTPELHERFVDAVNKLGGSE 680 79*********************97 PP | |||||||
2 | G2-like | 51.5 | 2.1e-16 | 708 | 738 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kAtPk++ ++mkv+gLt++hvkSHLQkYR+ ORUFI02G38560.3 708 TKATPKAVQKVMKVDGLTIYHVKSHLQKYRT 738 69****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF11107 | 1.3E-46 | 10 | 220 | No hit | No description |
Pfam | PF11107 | 2.0E-18 | 227 | 356 | No hit | No description |
SuperFamily | SSF46689 | 2.46E-14 | 653 | 682 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-28 | 655 | 739 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-6 | 658 | 685 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.0E-11 | 707 | 738 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.46E-14 | 711 | 739 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 4.4E-18 | 772 | 814 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MGWAHETVAM EELLGLVRGF VDVLVLAGGR TSSGAAATWR SGDVKKALQW ALFFEEVFKN 60 LRDDGQYDES ASELDAALVQ LASSPNFPKG IEDIRSKTLA MARELVVKHF LKTTNAENLG 120 AVLQAVVEMD MDGISASGEC NVCQEYVQSI LDMNLPSLMR TKNARDVGHS TSSDEFCEES 180 LFTGNSQILL KELQKKLDSG SCISLAEREL NTLLKSMKKD SFDSAGSTLC TSATAQKTQI 240 IDKFILWKQW KAKCLSYLLD ERTIRIMSGT NMIFNAPKEQ WMGLFEPLKV SADSSQSGII 300 EVMELCLLGL VARQWNSLIE SIMSHTFSSF PISKQYADLH QLLQGTTQDE CQDKLLGFKE 360 MDICEYARQS LESEPYILWL LPPVLTAAAM PPRSSLFKIY LVEIDKQLGE AASKDRPTST 420 MNQLRNGKVP QYLSPAITVV PELSEVTFPS FSEHRPSYIE REQCGSSINS FDASTPMCML 480 ASNFTSDLYI NKSESPNGKL SSESYAIDTS GCDSSLPPTQ SLYKGNPSSL RMVYPKVSEQ 540 NSWSQEPLPG PFVCPTSVDF FDQQDMTIFD QQIQDNIAAS PSTNLAKQNE WFSSGTSLQY 600 LESSVSAGSV LKAVDATSTT PSNYLHCHAQ RNTSNPPNFN EICSGNIASS NIAPTKPRMR 660 WTPELHERFV DAVNKLGGSE SWSLILCFSY HIFILNFYGT VLFSQEETKA TPKAVQKVMK 720 VDGLTIYHVK SHLQKYRTVH HRPQLSDGES AKSGQTDEVS SQPLKGMETT CEGLRVQIGL 780 QKQLHEQLEI QRKLQLQVEE HSKYLAMIIE KQSESLRQLG ALPRSLDAPT QVLDNRETCE 840 GQTGDADSAE QKPEK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066382 | 0.0 | AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627299.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
Refseq | XP_015627301.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
Refseq | XP_015627302.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
Refseq | XP_025878774.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
Refseq | XP_025878775.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
TrEMBL | A0A0E0NMQ7 | 0.0 | A0A0E0NMQ7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G38560.3 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5494 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 3e-42 | phosphate starvation response 1 |