PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G38560.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 756aa    MW: 83970.3 Da    PI: 5.2826
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G38560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.92.6e-34585639155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++hvkSHLQkYR+
  ORUFI02G38560.1 585 KPRMRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVDGLTIYHVKSHLQKYRT 639
                      79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF111079.5E-4710220No hitNo description
PfamPF111071.5E-18227356No hitNo description
PROSITE profilePS5129413.029582646IPR017930Myb domain
SuperFamilySSF466896.63E-18582640IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-31584640IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25585639IPR006447Myb domain, plants
PfamPF002491.1E-10587638IPR001005SANT/Myb domain
PfamPF143793.7E-18673715IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MGWAHETVAM EELLGLVRGF VDVLVLAGGR TSSGAAATWR SGDVKKALQW ALFFEEVFKN  60
LRDDGQYDES ASELDAALVQ LASSPNFPKG IEDIRSKTLA MARELVVKHF LKTTNAENLG  120
AVLQAVVEMD MDGISASGEC NVCQEYVQSI LDMNLPSLMR TKNARDVGHS TSSDEFCEES  180
LFTGNSQILL KELQKKLDSG SCISLAEREL NTLLKSMKKD SFDSAGSTLC TSATAQKTQI  240
IDKFILWKQW KAKCLSYLLD ERTIRIMSGT NMIFNAPKEQ WMGLFEPLKV SADSSQSGII  300
EVMELCLLGL VARQWNSLIE SIMSHTFSSF PISKQYADLH QLLQGTTQDE CQDKLLGFKE  360
MDICEYARQS LESEPYILWL LPPVLTAAAM PPRSSLFKIY LVEIDKQLGE AASKDRKCNC  420
GGDGIDQHQN CEISERIQCL YTFHSIDHPI SKGSSVVVLS THLMLLLQCN SWSQEPLPGP  480
FVCPTSVDFF DQQDMTIFDQ QIQDNIAASP STNLAKQNEW FSSGTSLQYL ESSVSAGSVL  540
KAVDATSTTP SNYLHCHAQR NTSNPPNFNE ICSGNIASSN IAPTKPRMRW TPELHERFVD  600
AVNKLGGSEK ATPKAVQKVM KVDGLTIYHV KSHLQKYRTV HHRPQLSDGE SAKSGQTDEV  660
SSQPLKGMET TCEGLRVQIG LQKQLHEQLE IQRKLQLQVE EHSKYLAMII EKQSESLRQL  720
GALPRSLDAP TQVLDNRETC EGQTGDADSA EQKPEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-27585643260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-27585643260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-27585643260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-27585643260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-27585643260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-27585643260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-27585643260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-27585643260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663820.0AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627299.10.0uncharacterized protein LOC4331121
RefseqXP_015627301.10.0uncharacterized protein LOC4331121
RefseqXP_015627302.10.0uncharacterized protein LOC4331121
RefseqXP_025878774.10.0uncharacterized protein LOC4331121
RefseqXP_025878775.10.0uncharacterized protein LOC4331121
TrEMBLA0A0E0NMQ50.0A0A0E0NMQ5_ORYRU; Uncharacterized protein
STRINGOGLUM02G38210.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.12e-47phosphate starvation response 1