PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G38340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 331aa MW: 36318.7 Da PI: 7.4375 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159 | 1.9e-49 | 10 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrF P+deelv++yL++kv +++ ++ evd++++ePw+Lp +k +++ewyfFs rd+kyatg r+nratksgy ORUFI02G38340.1 10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfagvggA---AaagggTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGY 100 79********************9999966665551...0445547***************87788999************************** PP NAM 83 Wkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatgkd+ +++ + + vg++ktLvfy+grap+g+kt+Wvmhe+r+ ORUFI02G38340.1 101 WKATGKDRVIHNPklhaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 154 ***********98777776655556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-58 | 7 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.624 | 10 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 11 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG VGGAAAAGGG TMVEVDLHTH 60 EPWELPDVAK LSTNEWYFFS FRDRKYATGL RTNRATKSGY WKATGKDRVI HNPKLHAAAH 120 RRASIVGMRK TLVFYRGRAP NGVKTNWVMH EFRMENPHTP PKEDWVLCRV FYKKKAETET 180 ESSYSMENEQ EAVIAMARSA AAIKAGGCYS NSSSSHDPAA AGHHSPPPFP ASLAACSSSH 240 HYSSHPPPPP DHHHHHHMPV TGGGGGSLNE FIPTTSMALY SSIFDFSQHL DGGAVAASAS 300 AAGSRVDGGE QCGLMELGLE EHYNYNGLMP M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-46 | 1 | 179 | 4 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-46 | 1 | 179 | 4 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-46 | 1 | 179 | 4 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-46 | 1 | 179 | 4 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-46 | 1 | 179 | 7 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-46 | 1 | 179 | 7 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-46 | 1 | 179 | 7 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-46 | 1 | 179 | 7 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-46 | 1 | 179 | 7 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-46 | 1 | 179 | 7 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-46 | 1 | 179 | 7 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-46 | 1 | 179 | 7 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-46 | 1 | 179 | 4 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-46 | 1 | 179 | 4 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060976 | 0.0 | AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623778.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | Q84TE6 | 6e-60 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0NML9 | 0.0 | A0A0E0NML9_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AEI0 | 0.0 | B8AEI0_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6K5X2 | 0.0 | Q6K5X2_ORYSJ; Os02g0810900 protein | ||||
STRING | ORUFI02G38340.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0810900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-77 | NAC domain containing protein 74 |