PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G37320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 441aa MW: 44306.1 Da PI: 5.834 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6.1e-12 | 223 | 268 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq ORUFI02G37320.1 223 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 268 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.37E-17 | 216 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 218 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 220 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.96E-13 | 222 | 272 | No hit | No description |
Pfam | PF00010 | 3.0E-9 | 223 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 224 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MQPNARQMRG GGGGGGGGQD DFFDQMLSTL PAVWSELGSG KPAWDLTAGA VGGGGGASDD 60 HSAAAFDDSA LLASRLRQHQ IDGGGDKPIM LQLSDLHRHH GLAAGDDSGG AAGFLPLSLF 120 ADRSQDDIDA AFKSPNGARG DHALYNGFGA AGMHGAAAMQ PPPFGQGGSM PAQSFGGGAA 180 ASGGGGGGSA SAAAAAGASS GGGAAAPPRQ RQRARRGQAT DPHSIAERLR RERIAERMKA 240 LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GASAVAPLVA NMSSESNGNA 300 NATSSSGNGE AANGSSNGDN NGGGTLRVTE QQVAKLMEED MGSAMQYLQG KGLCLMPISL 360 ATAISSATSS SLLPRTGGGA GGSLHEGGNG TSPPLVNGTA TGCDDAGVFF SVKFVVELSF 420 LLLNEDCRGK EESKLLVQKG P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 232 | RLRRER |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003975 | 0.0 | AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04. | |||
GenBank | AP004094 | 0.0 | AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627343.1 | 0.0 | transcription factor bHLH66 | ||||
Swissprot | Q9ZUG9 | 9e-77 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A0E0NM44 | 0.0 | A0A0E0NM44_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G37320.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 1e-40 | LJRHL1-like 3 |
Publications ? help Back to Top | |||
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