PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G36040.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 656aa    MW: 72812.7 Da    PI: 5.4077
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G36040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07539586347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E  +lvd+v+++G g W+ I r        Rt  ++k++w+++
  ORUFI02G36040.1 539 AWTLCEVVKLVDGVARYGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 586
                      7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-11532590IPR009057Homeodomain-like
PROSITE profilePS5129413.899532591IPR017930Myb domain
SMARTSM007179.5E-7536589IPR001005SANT/Myb domain
CDDcd116602.49E-17538588No hitNo description
SuperFamilySSF466894.91E-14538591IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MDKIPRLVSS APCAISRLNR GGAPISVWRA EQGEGILVGG PQDALDNRSD DNDFDKNDNS  60
DPVVYQLVRV EGDGTLIPAT EDEVLQFETF LHDEKVDDDL PSIDDVTHVE EYFTNDCIVK  120
KPEFEEGPSK LDTADVQTQK LDAGLEEDRL CTLNDSIVLP SNCSAVHDQQ LDKLNTEQGA  180
NIIAQQDNAS TETTKSTVLN DLSSDKEKAD ACSKPVNEAS AGQSVSGVTS SVPDFSILKG  240
EVCLDDLTMR ELQEAFRATF GRQTTVKDKL WLKRRIAMGL INSCDVPSSG CVVRDYKVIA  300
MGAKQEIPVV EAIPKMELEA NLVRDQVMNP GHERDLPSSL SYHSEEQQRS SKRLKRVPTD  360
NDEPQVTIFA EQGTTKRIRK PTKRYIEELS DIDTHESTGR LSSPGKRHVY DEVLLRPRIA  420
PLHEVDSLST AYPTREDTLG GCSVHVPYVS RMRRGRPRSN FIPFLDPEPS VECTEAPAAD  480
VVNLEKEGER KNHKNTGKKG VHVETSCEKD VQGLQDKDFC DSDDNPKTKR GGKRKHHRAW  540
TLCEVVKLVD GVARYGAGKW SEIRRLAFSS YSYRTSVDLK DKWRNLIRAS QTQLSTENDG  600
VCPRKSNPSA IPIPVSILLR VKKLAEMQSQ AGDVRVPIKF SGQSTTVVQG KVSGFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703940.0AK070394.1 Oryza sativa Japonica Group cDNA clone:J023049B09, full insert sequence.
GenBankFJ9402130.0FJ940213.1 Oryza sativa Japonica Group clone KCS120F03 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625825.10.0uncharacterized protein LOC4330901 isoform X2
TrEMBLA0A0E0NLM70.0A0A0E0NLM7_ORYRU; Uncharacterized protein
STRINGORUFI02G36040.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-80TRF-like 6