PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G35580.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 756aa MW: 79604.3 Da PI: 6.2729

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G35580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.4e-30	402	461	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ ORUFI02G35580.1 402 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 461 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-31	387	463	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-27	395	463	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	397	463	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	402	462	IPR003657	WRKY domain
Pfam	PF03106	1.5E-26	403	461	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MTWDNRIKEE SSLLIALLIR LRHPDIDLNA SGEVALGFKT VPHFSCTKRD KGTQDNQKEA 60 RSMSSKKKRA AIDLSLEAER RRPEEGGGGS DREASDGAAA AAEEDGDVKQ REGPKEETGG 120 EEEKVVEVVV DQGEDGSNEE IKYRTQQAEM IEEDKQPAAA ANVDDDGGDS DGVGASAEEK 180 HMVTEATGGE GDDGGDSRTP MAQDELSEMQ EEMERMKEEN RMLRRVVDKT VRDYYELQMK 240 LAAYQQQPAA ADEPKETEVF LSLGATAAAS AGCGGGFPEA KSKEQAAWRR RSVGSDDSDG 300 GKEDLGLSLS LGASSSYDDD QKAVEARPHD VDGAAAAAMI GGDGSRPAPR GYALLESSKV 360 QGGAAPAAGE LAAAGGITSQ SVNPANRKTR VSVRVRCQGP TMNDGCQWRK YGQKVAKGNP 420 CPRAYYRCTV APGCPVRKQV QRCLEDMSIL VTTYEGTHNH PLPVGATAMA STTSAAATFM 480 LLSSTTSSSS VSDASAAPSS SYLSPYLLNS ASPLLMPGAT GGGGGMQHLN LFGNSPSSSS 540 LLAPQAPGSS KYPWSPNHPP LAGAGGNKRP FWSAGGDGDK PAPAALAENV GAVMSDPNKF 600 SAAIAAAINN FMGKDGESSS GKSSTFAWTR SMDCTATPAS VPAPARPRRE PVHGPGPHRA 660 EQAAKLAPKN GCPCLSPFSL SLGLLLSSSS SSSPTPSRPR AHRRRNPADL LRSRIGRSPP 720 GSRFPKKWQE VQGQGGMWLV SLDPHRIPSL RTAGKQ

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MTWDNRIKEE SSLLIALLIR LRHPDIDLNA SGEVALGFKT VPHFSCTKRD KGTQDNQKEA  60
RSMSSKKKRA AIDLSLEAER RRPEEGGGGS DREASDGAAA AAEEDGDVKQ REGPKEETGG  120
EEEKVVEVVV DQGEDGSNEE IKYRTQQAEM IEEDKQPAAA ANVDDDGGDS DGVGASAEEK  180
HMVTEATGGE GDDGGDSRTP MAQDELSEMQ EEMERMKEEN RMLRRVVDKT VRDYYELQMK  240
LAAYQQQPAA ADEPKETEVF LSLGATAAAS AGCGGGFPEA KSKEQAAWRR RSVGSDDSDG  300
GKEDLGLSLS LGASSSYDDD QKAVEARPHD VDGAAAAAMI GGDGSRPAPR GYALLESSKV  360
QGGAAPAAGE LAAAGGITSQ SVNPANRKTR VSVRVRCQGP TMNDGCQWRK YGQKVAKGNP  420
CPRAYYRCTV APGCPVRKQV QRCLEDMSIL VTTYEGTHNH PLPVGATAMA STTSAAATFM  480
LLSSTTSSSS VSDASAAPSS SYLSPYLLNS ASPLLMPGAT GGGGGMQHLN LFGNSPSSSS  540
LLAPQAPGSS KYPWSPNHPP LAGAGGNKRP FWSAGGDGDK PAPAALAENV GAVMSDPNKF  600
SAAIAAAINN FMGKDGESSS GKSSTFAWTR SMDCTATPAS VPAPARPRRE PVHGPGPHRA  660
EQAAKLAPKN GCPCLSPFSL SLGLLLSSSS SSSPTPSRPR AHRRRNPADL LRSRIGRSPP  720
GSRFPKKWQE VQGQGGMWLV SLDPHRIPSL RTAGKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	389	465	1	76	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004058	0.0	AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBank	AP004080	0.0	AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623937.2	0.0	probable WRKY transcription factor 47
TrEMBL	A0A0E0NLG8	0.0	A0A0E0NLG8_ORYRU; Uncharacterized protein
STRING	ORUFI02G35580.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8022	34	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	3e-49	WRKY DNA-binding protein 9