PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G35180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 29482 Da PI: 7.8602 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 120 | 170 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+W+AeIrdp+ r r +lg+f+tae+Aa+a++ a+++++g ORUFI02G35180.1 120 SRYRGVRRRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEDAARAYDVAALEFRG 170 79********.**********82....48*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-23 | 120 | 180 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.36E-30 | 120 | 180 | No hit | No description |
Pfam | PF00847 | 1.7E-13 | 120 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.897 | 121 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-37 | 121 | 184 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-31 | 121 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-8 | 187 | 213 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MVPRVERGGG GFHLPNSERE DSLFIRALIS VVSGDTTVPT LLPEPTMATV VAGAATCARC 60 GVDGCIGVDC EVVVLAAAAG SSSSDEEDEG ECTTGAVASG GVTGGVGKRR PRRRSGGEGS 120 RYRGVRRRPW GKWAAEIRDP RRAVRKWLGT FDTAEDAARA YDVAALEFRG QRGKLNFPAS 180 HVHSSITTSD AARAYDVAAL EFRGQRAKLN FPASTAAQQP RPLLHHNLRE NCGSNASSPV 240 HAPEHARTAA AAKDQEIWDG LREIMMLDDG SFWSMP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 116 | 181 | 9 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 113 | RRPRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624274.1 | 1e-167 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0E0NLC3 | 0.0 | A0A0E0NLC3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G35180.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 8e-16 | ERF family protein |