PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G34150.3

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 129aa MW: 14827.9 Da PI: 8.8085

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G34150.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.9	1.9e-16	45	96	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++ k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g ORUFI02G34150.3 45 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 96 57**************9995.....234***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.55E-18	45	106	IPR016177	DNA-binding domain
Pfam	PF00847	2.6E-10	45	96	IPR001471	AP2/ERF domain
CDD	cd00018	2.68E-23	45	104	No hit	No description
SMART	SM00380	4.1E-28	46	110	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.0E-20	46	105	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.571	46	104	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-6	47	58	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-6	86	106	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MAEVMIPRKK LPEYERELED IRDMSREECV TYLRRRSSCF SRGASIYRGV TRRQKDGRWQ 60 ARIGLVAGTR DIYLGTFKTE EEAAEAYDIA AIEIRGKNAV TNFDRSNYME KGMHCIEGAG 120 LKLLASKPE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	54	RRRSSCFSRGASIYRGVTRRQK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269\|PubMed:15988559}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242387	0.0	AK242387.1 Oryza sativa Japonica Group cDNA, clone: J080051E14, full insert sequence.
GenBank	AY685114	0.0	AY685114.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D8 (AP2D8) mRNA, complete cds.
GenBank	FJ940220	0.0	FJ940220.1 Oryza sativa Japonica Group clone KCS100F03 AP2D8 transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626428.1	7e-80	AP2-like ethylene-responsive transcription factor PLT1 isoform X1
Refseq	XP_015626429.1	7e-80	AP2-like ethylene-responsive transcription factor PLT1 isoform X1
Refseq	XP_015626430.1	7e-80	AP2-like ethylene-responsive transcription factor PLT1 isoform X1
Swissprot	Q6PQQ3	8e-41	AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBL	A0A0E0NKY7	1e-89	A0A0E0NKY7_ORYRU; Uncharacterized protein
STRING	OMERI02G30300.1	3e-79	(Oryza meridionalis)
STRING	OS02T0747600-01	2e-79	(Oryza sativa)
STRING	ONIVA06G04560.1	3e-79	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	2e-32	AP2 family protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Molitor AM,Bu Z,Yu Y,Shen WH Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes. PLoS Genet., 2014. 10(1): p. e1004091 [PMID:24465219] Feng J,Chen D,Berr A,Shen WH ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Plant Physiol., 2016. 172(3): p. 1746-1759 [PMID:27630184] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]