PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G33610.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 426aa    MW: 46508.9 Da    PI: 9.8832
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G33610.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.83.7e-2354119171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      rk+ksL+ll+++f++l+++ + + + l+++a++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  ORUFI02G33610.2  54 RKQKSLGLLCSNFVALYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVGILVRKAKNRYSWIG 119
                      79*****************999************...**..****************************98 PP
2E2F_TDP75.84.2e-24199279171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++ln i+k     ++k+++rw g
  ORUFI02G33610.2 199 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghaenSMRTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 279
                      79********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-2550120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.95E-1653118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.4E-2954119IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-2055119IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.4E-22196280IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-30199279IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-19200279IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-12201279IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006086Biological Processacetyl-CoA biosynthetic process from pyruvate
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005739Cellular Componentmitochondrion
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004739Molecular Functionpyruvate dehydrogenase (acetyl-transferring) activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MATAAVMAAV PSSSPADAAE AVVMTEAVPS LPQRQQPVFV EGRGGKLRDH AYSRKQKSLG  60
LLCSNFVALY NRDDVESIGL DDAARRLGVE RRRIYDIVNV LESVGILVRK AKNRYSWIGF  120
GGVPMALREL KERALREKSG LAPLPVEEPS AAIMSDDEDE DKMGDADGDT ESEKLSQPVD  180
NPSDNKPGAP RCRLRSDHRK EKSLGLLTQN FVKLFLTMEV DTISLDEAAK LLLGEGHAEN  240
SMRTKVRRLY DIANVLSSLN FIDKIQQADS RKPAFRWLGS AGKPKAENGV TIAVPPPGKT  300
ISNKRAFGTE LTNIDINRSR LDSTIPKKAK LTQSGGEILK NCKLSVQKQL GQGSKGGFVY  360
GPFHPAGARK QELDNGNKGH TDNVQNWESL AASFRPQYQN QGKISLPISF LPTHPQIHLA  420
VAAAKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A9e-37532713228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115370.0AK111537.1 Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626334.10.0E2F transcription factor-like E2FE
TrEMBLA0A0E0NKR60.0A0A0E0NKR6_ORYRU; Uncharacterized protein
STRINGORGLA02G0274600.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.13e-92DP-E2F-like 1