PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G32980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 277aa MW: 31124.6 Da PI: 10.4237 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90 | 1.2e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +++fsstg+lye+ss ORUFI02G32980.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 53.7 | 8.7e-19 | 137 | 224 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ + q+e+a L+++++nLq+++++l+Ge+L+ L +++Lq Le++Le l++iR +K l++++ el + + +++++ +L +k ORUFI02G32980.1 137 KQQGYIANQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEINLRNIRMRKGSLIHQENIELSRSLNVMSQQKLELYNK 224 556666789********************************************************99988888888888887777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.17 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.14E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 8.11E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.656 | 141 | 238 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.2E-16 | 144 | 224 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLVVFSS TGRLYEFSST 60 NMKTVIDRYT NAKEELLGGN ATSEIKHLRA SGQAILKFAN DGKSMHILTS NVQPKKRMKI 120 IRCQFCKQNG CKATKPKQQG YIANQREAAS LRQQLHNLQE SHKQLMGEEL SGLGVRDLQG 180 LENRLEINLR NIRMRKGSLI HQENIELSRS LNVMSQQKLE LYNKACEQRG ATDANESSST 240 PYSFRIIQNA NMPPSLELSQ SQQREGECSK TAAPELG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 5e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 5e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 5e-21 | 1 | 74 | 1 | 74 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT835372 | 0.0 | CT835372.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626795.1 | 1e-106 | MADS-box transcription factor 57 isoform X2 | ||||
Swissprot | Q6Z6W2 | 1e-107 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A0E0NKI9 | 0.0 | A0A0E0NKI9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G32980.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 5e-72 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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