PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G32410.4
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 491aa    MW: 53695.1 Da    PI: 6.0943
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G32410.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-0688129540
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                       C+ + e++   +C+++   lC +C  + H+       Ht++
  ORUFI02G32410.4  88 LCDFCREQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 129
                      7*****************************657888888876 PP
2zf-B_box21.93.8e-07131173541
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                       C+++  +++   C + ++ lC++C  ++H g       H++++
  ORUFI02G32410.4 131 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 173
                      7*****************************.5588889998876 PP
3CCT64.14.1e-22434477144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  ORUFI02G32410.4 434 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 477
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.28184131IPR000315B-box-type zinc finger
SMARTSM003367.3E-1284131IPR000315B-box-type zinc finger
CDDcd000212.07E-788131No hitNo description
PROSITE profilePS501199.058127174IPR000315B-box-type zinc finger
CDDcd000211.43E-5131174No hitNo description
SMARTSM003360.24132174IPR000315B-box-type zinc finger
PROSITE profilePS5101715.408434476IPR010402CCT domain
PfamPF062039.1E-17434476IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MNILIALVVI HLKCFCWLQS NSSGSFHGLY QYTYISPTLT KEWKQTHHYP GRIPLNSTVE  60
QKARKVAVLV ALSASGSAPV LYRTMDALCD FCREQRSMVY CRSDAASLCL SCDRNVHSAN  120
ALSRRHTRTL LCDRCVGQPA AVRCLEENTS LCQNCDWNGH GAASSAAGHK RQTINCYSGC  180
PSSAELSRIW SFSMDIPTVA AEPNCEEGIN MMSINDNDVN NHCGAPEDGR LLDIASTALM  240
SDLPTGDKFK PLIGSSSGDG MNLLPLNSDQ PAEPVSTTPK APCVTDKDMF NDGSVYGDFC  300
VDDADLTFEN YEELFGTSHV QTEQLFDDAG IDSYFEMKDV PADESNEQPK PVQPECSNVA  360
SVDSGMSNPA ARADSSHCIP GRQAISNISL SFSGLTGESS AGDFQDCGVS SMILMGEPPW  420
HPPGPESSSA GGSRDNALTR YKEKKKRRKF DKKIRYASRK ARADVRKRVK GRFVKAGEAY  480
DYDPLSQTRS Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443447KKKRR
2443448KKKRRK
3444448KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8322790.0CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence.
GenBankCT8322800.0CT832280.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228J16, full insert sequence.
GenBankCT8322820.0CT832282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
SwissprotQ9SSE51e-126COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0E0NKB70.0A0A0E0NKB7_ORYRU; Uncharacterized protein
STRINGORUFI02G32410.40.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.44e-93CONSTANS-like 9