PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G32410.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 407aa    MW: 44279.1 Da    PI: 4.8382
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G32410.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.4e-06445540
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ + e++   +C+++   lC +C  + H+       Ht++
  ORUFI02G32410.2  4 LCDFCREQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                     7*****************************657888889876 PP
2zf-B_box22.13.1e-074789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                      C+++  +++   C + ++ lC++C  ++H g       H++++
  ORUFI02G32410.2 47 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 89
                     7*****************************.5588889998876 PP
3CCT64.53.2e-22350393144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  ORUFI02G32410.2 350 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.8E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.31147IPR000315B-box-type zinc finger
CDDcd000212.34E-7447No hitNo description
PROSITE profilePS501199.0584390IPR000315B-box-type zinc finger
CDDcd000211.54E-54790No hitNo description
SMARTSM003360.244890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.408350392IPR010402CCT domain
PfamPF062037.0E-17350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDALCDFCRE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVGQPAAVRC  60
LEENTSLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA ELSRIWSFSM DIPTVAAEPN  120
CEEGINMMSI NDNDVNNHCG APEDGRLLDI ASTALMSDLP TGDKFKPLIG SSSGDGMNLL  180
PLNSDQPAEP VSTTPKAPCV TDKDMFNDGS VYGDFCVDDA DLTFENYEEL FGTSHVQTEQ  240
LFDDAGIDSY FEMKDVPADE SNEQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA  300
ISNISLSFSG LTGESSAGDF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018880.0AB001888.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:S3574.
GenBankAK0716300.0AK071630.1 Oryza sativa Japonica Group cDNA clone:J023105D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627427.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_015627428.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
RefseqXP_025878659.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0E0NKB40.0A0A0E0NKB4_ORYRU; Uncharacterized protein
TrEMBLA0A0E0NKB50.0A0A0E0NKB5_ORYRU; Uncharacterized protein
STRINGORUFI02G32410.40.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-94CONSTANS-like 9