PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G31640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 22442.5 Da PI: 11.5887 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 48.9 | 1.9e-15 | 112 | 164 | 48 | 100 |
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +l ++ da+sslvyeA+ r+rdPvyG+vg i+ +q+q++ql+ +la+++ e ORUFI02G31640.1 112 ELLARQQGDAVSSLVYEANDRMRDPVYGCVGAISFMQNQVSQLQMQLAVAQGE 164 45667899****************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 4.4E-13 | 112 | 162 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MAMRPKPAGR RRRLAKASRA EQRRAKPKGR IGWRRVERRR SKPKGRSSAA AGGEVAIRRR 60 SRSPQQRRVS FSHVVVAAAA ATWPVTDRHY REDWDDVQWV AVRVVQAAAA AELLARQQGD 120 AVSSLVYEAN DRMRDPVYGC VGAISFMQNQ VSQLQMQLAV AQGEILCIQM QHRDGNENKK 180 NVREEEERED GKKERRC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003983 | 1e-148 | AP003983.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1038_A06. | |||
GenBank | AP004165 | 1e-148 | AP004165.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1479_B12. | |||
GenBank | AP014958 | 1e-148 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624534.1 | 9e-57 | LOB domain-containing protein 12 | ||||
TrEMBL | A0A0E0NK14 | 1e-138 | A0A0E0NK14_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G31640.1 | 1e-139 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-26 | LBD family protein |