PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G29040.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 395aa    MW: 40070.9 Da    PI: 8.9416
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G29040.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.5e-3990151263
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                      kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  ORUFI02G29040.2  90 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 151
                      7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3186148IPR003851Zinc finger, Dof-type
PfamPF027012.7E-3392148IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05994148IPR003851Zinc finger, Dof-type
PROSITE patternPS01361096132IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MANLLFFVQI YARIGHILLA LCGLGLVKPM EEMLMGANPN PNGSSNQPPP PPSSAASAQR  60
PIAPPAAGAA AGAGAAGAGA GTERRARPQK EKALNCPRCN STNTKFCYYN NYSLQQPRYF  120
CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS SSVVPSAAAS ASTSAAVSGS VPVGLAAKNP  180
KLMHEGAQDL NLAFPHHHGR ALQPPEFTAF PSLESSSVCN PGGNLAAANG AGGRGSVGAF  240
SAMELLRSTG CYVPLPQMAP LGMPAEYAAA GFHLGEFRMP PPPQQQQQQQ AQTVLGFSLD  300
THGAGAGGGS GVFGACSAGL QESAAGRLLF PFEDLKPVVS AAAGDANSGG DHQYDHGKNQ  360
GGGGGVIGGH EAPGFWNSSM IGNGSSNGGG GGGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281300.0AB028130.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627550.10.0dof zinc finger protein 2 isoform X1
SwissprotB9F1L80.0DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBLA0A0D9YWC00.0A0A0D9YWC0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NJ440.0A0A0E0NJ44_ORYRU; Uncharacterized protein
STRINGOGLUM02G28130.20.0(Oryza glumipatula)
STRINGORUFI02G29040.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-42Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]