PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G28900.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 615aa    MW: 63579.7 Da    PI: 8.6313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G28900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0595117123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  ORUFI02G28900.1  95 FVCEVCNKGFQREQNLQLHRRGH 117
                      89*******************88 PP
2zf-C2H211.50.00091172194123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  ORUFI02G28900.1 172 WKCDKCSKRYAVQSDWKAHSKIC 194
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-794117No hitNo description
Gene3DG3DSA:3.30.160.608.6E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09495117IPR007087Zinc finger, C2H2
SMARTSM003550.004195117IPR015880Zinc finger, C2H2-like
PfamPF121714.0E-595117IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.68E-7167192No hitNo description
SMARTSM00355140172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HEDQIKPLFA QQQQHHHHQP PMAPSNAAAA ASAAGSAAGQ  60
AAVAAPPAKK KRTLPDPDAE VIALSPKTLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP  120
WKLKQKNPLQ AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR  180
YAVQSDWKAH SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL PPAAAGHLYG  240
SAGAANMALS LSQVGSHLAS TLQDHGHHHH HHGASPDLLR FGGSGGGAMA ARLEHLLSSS  300
SASAFRPLPP PQQQPPAPFL LGAAPQGFGD GGDGSGPHGF LQGKPFHGLM QLPDLQGNGT  360
GGPSPSGPGL YNLGYIANSA NSSGTSSHGH ASQGQMTNTD QFSEGGGGGG GGGGSETSAA  420
ALFGAGGNFS GGDHHQVSPA GMYANDQAMM LPQMSATALL QKAAQMGSST SSANGAGASV  480
FGGGFAGSSA PSSIPHGRGT TMVDQGQMHL QSLMNSLAGG GNADHQGMFG SGSIIDPRLY  540
DMDQHEVKFS LQRGGGGGGD GDVTRDFLGV GGGGFMRGMS MARGEHHGGG GSDMHGTLEA  600
EMKSASSSFN GGRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34168230365Zinc finger protein JACKDAW
5b3h_F3e-34168230365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626115.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015626116.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015626117.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015626118.10.0protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0E0NJ250.0A0A0E0NJ25_ORYRU; Uncharacterized protein
STRINGORUFI02G28900.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-103indeterminate(ID)-domain 12