PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G28010.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 225aa MW: 23144.5 Da PI: 5.0812

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G28010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.3e-18	49	98	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g ORUFI02G28010.1 49 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 98 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.2E-32	49	107	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.998	49	106	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-12	49	98	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-22	49	107	IPR016177	DNA-binding domain
SMART	SM00380	5.2E-37	49	112	IPR001471	AP2/ERF domain
CDD	cd00018	1.88E-30	50	108	No hit	No description
PRINTS	PR00367	9.8E-11	50	61	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.8E-11	72	88	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDDSSFGSEP TTSSSGGEAP ASPPSTASSS SDGAGGKKKR PRKDGHHPTY RGVRMRSWGK 60 WVSEIREPRK KSRIWLGTFA TAEMAARAHD VAALAIKGRA AHLNFPDLAH ELPRPATAAP 120 KDVQAAAALA AAADFPASSA NAGASNNPDG SDDASAGSAS PPPPPDAADD ALFDLPDLLL 180 DLRYGPPSSG LSCASSWEDE VGLISGAGAA AAGVFRLEEP LLWEY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-17	47	106	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ307662	0.0	AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBank	AK108830	0.0	AK108830.1 Oryza sativa Japonica Group cDNA clone:002-151-G03, full insert sequence.
GenBank	AP005006	0.0	AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBank	AP005289	0.0	AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	AY258279	0.0	AY258279.1 Oryza sativa (japonica cultivar-group) CR102 putative AP2 domain-containing protein gene, complete cds.
GenBank	AY346094	0.0	AY346094.1 Oryza sativa AP2 domain-containing protein Rap211 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624298.1	1e-157	ethylene-responsive transcription factor ERF039
Swissprot	Q8LBQ7	7e-52	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A0E0GAM7	1e-156	A0A0E0GAM7_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0NIP7	1e-156	A0A0E0NIP7_ORYRU; Uncharacterized protein
TrEMBL	Q6H6G4	1e-156	Q6H6G4_ORYSJ; Os02g0657000 protein
TrEMBL	Q949B2	1e-156	Q949B2_ORYSA; AP2 domain-containing protein Rap211
STRING	ORUFI02G28010.1	1e-156	(Oryza rufipogon)
STRING	OS02T0657000-01	1e-156	(Oryza sativa)
STRING	ONIVA02G28990.1	1e-156	(Oryza nivara)
STRING	OBART02G26590.1	1e-156	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP159	35	354

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	2e-39	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]