PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G27260.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 276aa    MW: 29361.7 Da    PI: 10.534
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G27260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19195229135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  ORUFI02G27260.1 195 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 229
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.308189225IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-18189243IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-14189251No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15193227IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.78E-14194236No hitNo description
PROSITE patternPS003440195220IPR000679Zinc finger, GATA-type
PfamPF003201.7E-17195229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPLLPPVMDL PAHDVEELEW VSRIMDDSLA ELPLPQLPAA AAALAACGKP QHRRPHEGAA  60
SALLDPMRTP TICALSTEAL VPVKSRRSKR SRASVWSLSG APLSDSTSSS STATTSSCSS  120
SASFSPFLQY VDFPALVASD LLDEQPRSKK SKHGKNGKQK PKKRGRKPKH QQPPHLAAAA  180
AAGGGALPAT GDRRCSHCGV QKTPQWRAGP EGAKTLCNAC GVRYKSGRLL PEYRPACSPT  240
FVSSLHSNSH RKVLEMRRKK ETPVIVAAAA PAVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094770.0AK109477.1 Oryza sativa Japonica Group cDNA clone:001-200-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623357.11e-132GATA transcription factor 6
TrEMBLA2X7S90.0A2X7S9_ORYSI; GATA transcription factor
STRINGORUFI02G27260.10.0(Oryza rufipogon)
STRINGONIVA02G28320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-40GATA transcription factor 5