PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G25930.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 283aa MW: 31079.5 Da PI: 8.6233

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G25930.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.9	2.4e-50	10	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF P+deelv++yL+kkv+++++ +++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk gyWkatgkd+ev ORUFI02G25930.1 10 LPPGFRFFPSDEELVCHYLHKKVANERIAQGSTLVEVDLHAREPWELPEVAKLTASEWYFFSFRDRKYATGSRTNRATKMGYWKATGKDREVRG 103 79***********************999889***********87778889********************************99 PP NAM 95 k...........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg++ktLvfy+grap+g+kt Wvmhe+rl ORUFI02G25930.1 104 SsssssssssssSRAVVGMRKTLVFYQGRAPNGVKTGWVMHEFRL 148 8666655554444444*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-57	7	167	IPR003441	NAC domain
PROSITE profile	PS51005	56.56	10	167	IPR003441	NAC domain
Pfam	PF02365	2.2E-27	11	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MALREIESTL PPGFRFFPSD EELVCHYLHK KVANERIAQG STLVEVDLHA REPWELPEVA 60 KLTASEWYFF SFRDRKYATG SRTNRATKMG YWKATGKDRE VRGSSSSSSS SSSSSSRAVV 120 GMRKTLVFYQ GRAPNGVKTG WVMHEFRLDS PHSQPREDWV LCRVFQKRKG DGDGPQDSGG 180 AASPTFTGSM STTTFYSRRT TAAMQPQRRG GAHDSAAGFA NPTQPAVPHY QYGGAVIGFP 240 EEFGGGGGVA DEYGFGTYLD LGFELDDTAS VLGGIRSFPQ GWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-47	5	168	10	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	1e-153	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006648848.1	1e-132	PREDICTED: NAC domain-containing protein 21/22-like
Swissprot	Q9FLJ2	5e-60	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0E0NHY8	0.0	A0A0E0NHY8_ORYRU; Uncharacterized protein
STRING	ORUFI02G25930.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	3e-73	NAC domain containing protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]