PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G24640.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 300aa MW: 30722.1 Da PI: 8.3766

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G24640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	236	281	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq ORUFI02G24640.1 236 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 281 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.723	230	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-16	233	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.55E-12	234	285	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.3E-15	235	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	236	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-10	236	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MMRRFLPVGG GGGGGVEPSS SSTTPQRGEA EAAGLRFGGG DISLGPHGGG GGGGGGGGGH 60 GHQLQDGSVD LLARHSSSPA GFFSNLMASN GFPGSKGGGG SGAEAHHHPS MAGSGSGSSS 120 GGRKMKSQLS FTAGPPHLSH IAEDGAFPDR AGAEASVPRT FSAGGSSGGG GFSIVGPWEE 180 SRDIISTLGG YESQFGGMAS TSALEMAGMD RYLQLQHDQV PFKVRAKRGC ATHPRSIAER 240 ERRTRISEKL RKLQELVPNM DKQTSTADML DLAVEHIKGL QSQLQALKHE QEKCTCCSRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110833	0.0	AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625725.1	0.0	transcription factor bHLH128 isoform X1
Swissprot	Q8H102	8e-56	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0E0NHG9	0.0	A0A0E0NHG9_ORYRU; Uncharacterized protein
STRING	ORUFI02G24640.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-47	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]