PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G22530.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 387aa    MW: 40987.1 Da    PI: 6.6197
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G22530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07174195223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  ORUFI02G22530.1 174 FCDICGKGFRRDANLRMHMRAH 195
                      6*******************99 PP
2zf-C2H212.40.00047259283123
                      EEETTTT..EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                      y C+ Cg  k+F    +L++H+r +
  ORUFI02G22530.1 259 YACERCGgkKRFAVLADLRSHLRHC 283
                      89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-6170195No hitNo description
SMARTSM003550.0019173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614173195IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-6175195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573221254IPR015880Zinc finger, C2H2-like
SMARTSM0035517259282IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MKSTTHLLAG GGGGGSVAPP TAATAPTLAM EVGDPSGALV GGAGGAGAGG GDGDARDALL  60
RLVALGDRMA AVRRRIAASI SGESGPLSSS DIHSVSSEIS SAAHLVVLNA ASLLSSTVAS  120
LPAPPPPPAT TVQELPPVVV SVPQEPPQEA AKGDGDYDVV ELDASELLAE HVHFCDICGK  180
GFRRDANLRM HMRAHGDRFK TLDALSRPGQ PKPPAGREVR FSCPYAGCNR NRAHRRFRPL  240
KSAVCARNHF RRSHCPKLYA CERCGGKKRF AVLADLRSHL RHCGEEAQWR CSCGTTFSRK  300
DKLFGHLALF EGHTPAIAEP NKGVATAAAE ASISMMEEGG VEANCDREED EEGGFDPKFF  360
QEWMEELRGG AVAPNWPMVG RDDWEDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056990.0AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627485.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A0E0NGQ80.0A0A0E0NGQ8_ORYRU; Uncharacterized protein
STRINGORUFI02G22530.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.34e-70C2H2 family protein