PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G21290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 693aa MW: 73098.3 Da PI: 10.1252 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 9.8e-08 | 196 | 240 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W+ eEd l +v+++G g+W I ++ Rt q++ rw ORUFI02G21290.1 196 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 240 68******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 190 | 247 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.555 | 190 | 248 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-6 | 194 | 246 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-6 | 196 | 240 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.24E-13 | 197 | 256 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 6.78E-18 | 198 | 245 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MKKEFPGQAP TSRLHSEMDA AAAGGGGAAK RKRSFSEDDA YLILHRALVR RTSTGITSAR 60 EYQMLWRHLA YGHEFVESVE PASLPLDDGS DLECEIEIVP APGNEALAEA TSFAKTIITG 120 SSREQTSGQR VNSEAAALNT PNEKIVRVPS DKQLVPGHRL TNGTGPVSSS KQPSHTGSSP 180 DPLDPNGHPK KKKKPKPWSR EEDMELGAGV QKHGEGNWME ILHKYKFDSS RTHLQLQQRW 240 ALICKRQGST KPATPKIPNV MSEELKAAQK AFSLAIGTTR SSTLRPGGVP HHNPMVTTTN 300 PEVKSVTAPS PLPVPVHVVP VPVPVQPVQV QLPPPQLHQA PAQSAPPPPK VSNASNKSRN 360 NSKKQVAQSI PVNGPLSIQE AALAAGGRIA EPSVATNFLK AAQSTKAVHI RSRGTGSSKS 420 STGSKTPTVA GEPGTQLGSD QHLELQSTGG PSQVLTAHAT EQVHNVSEVA GVNPLGQSAG 480 VHLSETKKAL NTTPVSGSSD KMEIDDNSNY FAVTMEDLFP EDVKQEDVQD PKIEEAIDPK 540 DADMLEFDRF VAQGCLNKDN VDKSKAAKIA PEAQSVIGSQ KKQLKTLPTV GKSNPVFAGP 600 PATAKKTKAP VPQGGMSSGI VGVLNRSLGG KAPAPATTGT QSTVQKQQSM SSKGNLLVPK 660 NVAPGTVTPA NNRANTAVNG ASKVNPPASQ KPA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 194 | PKKKKKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ428900 | 0.0 | AJ428900.1 Oryza sativa partial mRNA for putative Myb-family transcription factor (myb-L1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627404.1 | 0.0 | uncharacterized protein LOC4329631 | ||||
TrEMBL | A0A0E0NGA1 | 0.0 | A0A0E0NGA1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G21290.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 6e-30 | MYB_related family protein |