PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G21080.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 424aa MW: 44392 Da PI: 5.724

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G21080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.3e-07	171	195	7	31
HHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 7 erErrRRdriNsafeeLrellPkas 31 rEr RR+r+N+ f+ +r+l+P+++ ORUFI02G21080.1 171 VRERERRRRMNDMFAGIRRLVPNLP 195 59*********************64 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-7	162	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-4	170	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-5	172	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MSQEEQRHGR QLPLATSGVI TFNGVPLSPL TAGVESDGDD DVVIVDACNN GKRKVVCNAS 60 GYICIDPQEW EHWILAMVVH EEQRHGRQLP LATSGVITFN GVPLSPLTAG AESDGDDDDV 120 VIVDACNNGK RKVGDGEEEG RGSQGGDDDD DVVAVHGGGG GGGNRACMFA VRERERRRRM 180 NDMFAGIRRL VPNLPEKGEE VRMEAQKQEL QRERDRLAME VAAAAGGAGA SSSSSSAAAA 240 AVTVAAYGPA GAVGSSSSSA AAAARANTVV PVPQRAARGA TAPTPRPVAP PQAGTWPLPA 300 PAAMPPPPPP PTGAAAVAPP PSLKTWSWGD NVVVSVLGNI GNMTVRAPLR RTGVLAMASA 360 ALKRYNITAV TSLSGTDASR TQNMFMFYTI IDMPDRQPQF VHPKVFEAMY RAAAAEIAAW 420 INCY

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MSQEEQRHGR QLPLATSGVI TFNGVPLSPL TAGVESDGDD DVVIVDACNN GKRKVVCNAS  60
GYICIDPQEW EHWILAMVVH EEQRHGRQLP LATSGVITFN GVPLSPLTAG AESDGDDDDV  120
VIVDACNNGK RKVGDGEEEG RGSQGGDDDD DVVAVHGGGG GGGNRACMFA VRERERRRRM  180
NDMFAGIRRL VPNLPEKGEE VRMEAQKQEL QRERDRLAME VAAAAGGAGA SSSSSSAAAA  240
AVTVAAYGPA GAVGSSSSSA AAAARANTVV PVPQRAARGA TAPTPRPVAP PQAGTWPLPA  300
PAAMPPPPPP PTGAAAVAPP PSLKTWSWGD NVVVSVLGNI GNMTVRAPLR RTGVLAMASA  360
ALKRYNITAV TSLSGTDASR TQNMFMFYTI IDMPDRQPQF VHPKVFEAMY RAAAAEIAAW  420
INCY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005611	0.0	AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878834.1	1e-157	uncharacterized protein LOC107276567 isoform X2
TrEMBL	A0A0E0NG77	0.0	A0A0E0NG77_ORYRU; Uncharacterized protein
STRING	ORUFI02G21080.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18142	7	7