PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G21070.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 316aa    MW: 32572.6 Da    PI: 5.4351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G21070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-1392141255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+h  +Er RR++i++ f  Lr+l+P++      K +Ka+i+ +A+ +I+sL+
  ORUFI02G21070.1  92 ERMHIFAERERRRKIKNMFTDLRDLVPSL----TNKADKATIVGEAISFIRSLE 141
                      578999**********************9....68*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1687153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-1389145No hitNo description
PROSITE profilePS5088814.91990140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1093141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1694153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1196146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.7E-5236288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAQEGTSSNA PPAAASMGSG DGDNKEGTGE SGNNQLLLPA IAASADKGKG VVAGTGNVDA  60
KGKTTAMAPA ASSTNAPNNQ GGGGGGGGRS RERMHIFAER ERRRKIKNMF TDLRDLVPSL  120
TNKADKATIV GEAISFIRSL EETVADLERR KRERDSLAAR CARLGLGGSS SSSAPPPPPP  180
PAAADDTAAV MPPAPAVPPP DAAAVTAGPE PAPAPAPGTL MVWSGPSVVL NLCGGDQAFI  240
NVSVARRSGV LTMIVDVLER HSIDVVTAQI ASDQSRSLFT IHTSVDRERG MFMDTATAEE  300
IYQLAVSEIM VWLHSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878857.10.0transcription factor bHLH95
TrEMBLA0A0E0NG760.0A0A0E0NG76_ORYRU; Uncharacterized protein
STRINGORUFI02G21070.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-16bHLH family protein