PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G21050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 62aa MW: 6526.55 Da PI: 12.0096 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.7 | 8.1e-10 | 33 | 54 | 2 | 24 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse 24 +y+GVr+++ +g+W+AeIrdp++ ORUFI02G21050.1 33 RYRGVRRRP-WGKWAAEIRDPRK 54 7********.**********954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-10 | 33 | 57 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-6 | 33 | 55 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.378 | 33 | 62 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-5 | 33 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
MVGVVSAGDH AGGANVAEAA AAVVVAAPAT ARRYRGVRRR PWGKWAAEIR DPRKAARYLK 60 AV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107852 | 2e-77 | AK107852.1 Oryza sativa Japonica Group cDNA clone:002-134-A10, full insert sequence. | |||
GenBank | AP005611 | 2e-77 | AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21. | |||
GenBank | AP005771 | 2e-77 | AP005771.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0069D13. | |||
GenBank | AP014958 | 2e-77 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 2e-77 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878870.1 | 4e-29 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A0E0NG75 | 5e-33 | A0A0E0NG75_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G21050.1 | 9e-34 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 3e-07 | ERF family protein |