PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G21040.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 155aa    MW: 16740.9 Da    PI: 11.9976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G21040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-183179254
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa ++++
  ORUFI02G21040.1 31 RYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFRTAEDAARAYDAAVLRFR 79
                     7********.**********94....36**********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-123179IPR001471AP2/ERF domain
SMARTSM003809.8E-323194IPR001471AP2/ERF domain
PROSITE profilePS5103225.3963188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-313190IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-223189IPR016177DNA-binding domain
PRINTSPR003676.7E-123243IPR001471AP2/ERF domain
CDDcd000181.49E-223989No hitNo description
PRINTSPR003676.7E-125470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVGVVSAGDH TGEASVAAAG VVVSAPATAR RYRGVRRRPW GKWAAEIRDP RKAARVWLGT  60
FRTAEDAARA YDAAVLRFRR RRAKLNFPEE ASRPRRPWKG HDVDHMSCSP PSIANARFLG  120
SWIFGPPPPS RSVAAATTTL LGGSHGSNGA DNGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212788163ATERF1
3gcc_A2e-212788163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624467.21e-104ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0NG741e-105A0A0E0NG74_ORYRU; Uncharacterized protein
STRINGORUFI02G21040.11e-106(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17401811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-17ERF family protein