PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G20760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 410aa MW: 46666.8 Da PI: 6.7534 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.3 | 5.6e-20 | 96 | 194 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcp 80 +W +v++L+ a+ +++e++ + ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++++++ ORUFI02G20760.1 96 KWISGMVKLLVSAVAYIDEDVDMDYgtgsaarrkhamlKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTaCQVVEHPE 189 799************8888877542334467778888899*******************************************95488887777 PP trihelix 81 yfdql 85 +++ + ORUFI02G20760.1 190 LLEGM 194 76655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-19 | 94 | 220 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MEGNLPPRGA LVHGHGGGVG AFDLEATMQP PPPFHFAQDP HLHHHQGMVP VRGNPMLDLG 60 NVVKTSPSDE EDVDDGHHHG GGGGSGKEAS QWHRVKWISG MVKLLVSAVA YIDEDVDMDY 120 GTGSAARRKH AMLKRKGKWR LVSAAMTERG FPVSPQQCED KFNDLNKRYK RMTEILGRGT 180 ACQVVEHPEL LEGMRLSGKL KEEARKHLNS KHLHYEEMCS YHNRNKMCLF DDPALQKSLR 240 LALRSGEEHA KKNPFGYDDE DFSDDDDEDE EFDDLEVSAE DHHHGIHGAK RLKHDQEETH 300 FGSNLSEVAV IDMNKMLSEG SGGPTAEKSP STPGMRDIRL EKRRLKIKAQ MLKIEQKHFK 360 WLRFSKEKDR ELEKMRLENE KMKLENERLE LELKLKEIEM GIKPKKIFSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004877 | 0.0 | AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627648.1 | 0.0 | uncharacterized protein LOC4329598 | ||||
TrEMBL | A0A0D3F650 | 0.0 | A0A0D3F650_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HYL5 | 0.0 | A0A0E0HYL5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NG47 | 0.0 | A0A0E0NG47_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X5U2 | 0.0 | A2X5U2_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6ESZ1 | 0.0 | Q6ESZ1_ORYSJ; Os02g0542400 protein | ||||
STRING | ORUFI02G20760.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0542400-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA07G07200.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART02G19680.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12774 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-63 | sequence-specific DNA binding transcription factors |