PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G19470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 24839 Da PI: 10.929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.2e-20 | 70 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + + +r++lg+f+tae Aa+a++ a+++++g ORUFI02G19470.1 70 HYRGVRRRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAAAAYDDAALRFKG 119 7********.**********9...3.35************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-32 | 69 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-34 | 70 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-22 | 70 | 128 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.30E-16 | 70 | 128 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 70 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.132 | 70 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSSRQPIGSG GGGAPPDWHD VEPQWQPVDD VVLARNPPAG RGRPVGPSAA AAAAALQAVE 60 AQGAAAAERH YRGVRRRPWG KWAAEIRDPN KAARVWLGTF DTAEAAAAAY DDAALRFKGA 120 KAKLNFPERV RGRTGQGGFL VSPAVPRPPP HGVPAPAPAV APAPFPDLIQ YARLLRSGED 180 AAAAAAVAGI AATAAPAAQI LDFAAQRLVG VSPAMAPRPP STLPTTTTAA SSPSAWPHGG 240 GHGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-23 | 69 | 130 | 4 | 66 | ATERF1 |
3gcc_A | 2e-23 | 69 | 130 | 4 | 66 | ATERF1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831330 | 0.0 | CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623923.1 | 6e-99 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A0E0NFM1 | 1e-165 | A0A0E0NFM1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G19470.1 | 1e-166 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP26962 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 1e-25 | related to AP2 6l |