PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G19410.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 261aa    MW: 27201.5 Da    PI: 4.3592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G19410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1761110255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a++ ++g
  ORUFI02G19410.1  61 RYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARTIRG 110
                      588******.**********843...4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.15E-2760119No hitNo description
PfamPF008474.0E-1061110IPR001471AP2/ERF domain
PROSITE profilePS5103221.28561118IPR001471AP2/ERF domain
SMARTSM003802.2E-3161124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2861118IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2161118IPR016177DNA-binding domain
PRINTSPR003671.4E-86273IPR001471AP2/ERF domain
PRINTSPR003671.4E-884100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MQPPHAAAVA AASSPTTTTT SSPRSLEEYG FLLLLLVDEH PEQQQQQQRE QEGGGGGNEA  60
RYLGVRRRPW GRYAAEIRDP ATKERHWLGT FDTAEEAAVA YDRAARTIRG AAARTNFAYP  120
DLPPGSSLTP YLSPDLSTND LHRHYYGAGA GADTQTAAAL PAPAQPAHGG DAQEMAYGGG  180
GGQNVGGVFD VVGGGGGAAW CDASELEFGG YDDAGASAAA AAVYFEEGYV HSPMFSPMPA  240
ADEVAADGFQ LGGSSSSSYY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1854117771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058450.0AP005845.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0461D06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879251.11e-156ethylene-responsive transcription factor LEP
TrEMBLA0A0E0NFL40.0A0A0E0NFL4_ORYRU; Uncharacterized protein
STRINGORUFI02G19410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.18e-23ERF family protein