PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G06400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 301aa MW: 32687.7 Da PI: 6.3532 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.9 | 1.5e-07 | 251 | 284 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + ORUFI02G06400.1 251 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 284 469*****************************87 PP | |||||||
2 | ELK | 26.9 | 1.1e-09 | 205 | 226 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+++Y+++L+++++E++ ORUFI02G06400.1 205 ELKNELKQGYKEKLVDIREEIL 226 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.2E-18 | 40 | 84 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.7E-15 | 43 | 80 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.2E-26 | 94 | 149 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.4E-16 | 102 | 148 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.8E-6 | 205 | 226 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0023 | 205 | 226 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.057 | 205 | 225 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.353 | 225 | 288 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-10 | 227 | 292 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 227 | 290 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.57E-11 | 228 | 289 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-25 | 232 | 289 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.2E-18 | 245 | 284 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MAFHYPDHGL AMDPSSAAAS SPNPSFSPGG GGGAGVGGGE REKAAVAAHP LYERLLEAHV 60 ACLRVATPVD QLPRIDAQIA ARPPPLAAAS AAAAAGGPSG GEELDLFMTH YVLLLCSFKE 120 QLQQHVRVHA MEAVMGCWEL EQSLQSLTGA SPGEGTGATM SDDEDNQVDS EANMFDGNDG 180 SDGMGFGPLM LTEGERSLVE RVRHELKNEL KQGYKEKLVD IREEILRKRR AGKLPGDTAS 240 ILKAWWQAHS KWPYPTEDDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP ASSGEKTKKK 300 R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 300 | RKRNWHSNPASSGEKTKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT835439 | 0.0 | CT835439.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA051K01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626238.1 | 0.0 | homeobox protein knotted-1-like 2 isoform X2 | ||||
Swissprot | Q0E3C3 | 0.0 | KNOS2_ORYSJ; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A0E0G2M1 | 0.0 | A0A0E0G2M1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NAT8 | 0.0 | A0A0E0NAT8_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G06400.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA02G07290.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-143 | KNOTTED1-like homeobox gene 3 |