PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G06340.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 638aa    MW: 69733.5 Da    PI: 6.4233
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G06340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.27.4e-28214267155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  ORUFI02G06340.1 214 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILDLMNVENITRENVASHLQKYRL 267
                      79*******************.********************************8 PP
2Response_reg78.81.8e-26321401109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l + +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  
  ORUFI02G06340.1  32 VLAVDDDPTCLKILENLLLRCQY-HVTTTGQAATALKLLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITH 123
                      799********************.***************888889*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+  e+l++
  ORUFI02G06340.1 124 GACDYLLKPVRLEQLRT 140
                      **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-2001634IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.0E-4229169No hitNo description
SuperFamilySSF521722.7E-3529151IPR011006CheY-like superfamily
SMARTSM004481.8E-3230142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.42531146IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2332141IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.29E-2733146No hitNo description
PROSITE profilePS5129410.912211270IPR017930Myb domain
SuperFamilySSF466891.27E-19211271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-29212272IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-24214267IPR006447Myb domain, plants
PfamPF002493.9E-6216266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MTVEERQGRV GGHGVSGGGG GGRDQFPVGM RVLAVDDDPT CLKILENLLL RCQYHVTTTG  60
QAATALKLLR ENKDQFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSA NGETQTVMKG  120
ITHGACDYLL KPVRLEQLRT IWQHVIRRKN CDAKNRGNDD DAGQKAQGMN NEGESIGANR  180
NKRQSRKSRD ENGDDGDDSD ENSNENGDSS TQKKPRVVWS VELHRKFVAA VNQLGIEKAV  240
PKKILDLMNV ENITRENVAS HLQKYRLYLK RLSTDASRQA NLAAAFGGRN PAYINMNSFG  300
NYNAYGRYRT VPTAGHTQAN NILTRMNSPS AFGVHGLLHS QPIQLGHAQN NLSTSLNDLG  360
GLNNGNMIRG AQMSTILTGP SGNSFPNISN GAPLATANRS LQPLESSNQQ HLSRVHSSSA  420
DPFSTLVGES PQFPDLGRTT NTWQTAVPSN IQDRGHNDNM SQATLHMNGP KIEPVSSFTS  480
SNQIPLLGNE MQGQVASLAS NVPIAFNQDT SPFNYGSSTN SRDMLNNSHV FSNSSINTSL  540
PNLSLDNPAV PRQTLDRGNT GIVSPMQDGK IHHQAVSNQL NYNDDLMRTT GLQRGLSGGL  600
DDIVVDMFRP DREDDGVPYI DGDWELISEE KLLNYSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-26210273164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1005300.0AK100530.1 Oryza sativa Japonica Group cDNA clone:J023101H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626716.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0E0NAT20.0A0A0E0NAT2_ORYRU; Two-component response regulator
STRINGORUFI02G06340.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-112response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]