PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G04590.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 304aa    MW: 33514.3 Da    PI: 10.6993
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G04590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.71.4e-561282652139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  ORUFI02G04590.1 128 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 221
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  ORUFI02G04590.1 222 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 265
                      *****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.5E-72115284IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.79E-75119304IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.8E-57128262IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAHSLMAVGP GRPDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFLFSH SIRHPLLGGQ  60
RDGGGKPRPT MQRLSRFVPS SSSVFPLLRR VTDLKDALWS GSLTFQHALS TFAADENTSG  120
RKFASYTVFK GKAALSMQPI LPSFSKLESG GSRVNKNGSV MLTFFPAVGQ RKYDYSKKQL  180
FALSPTEVGS LISLGPAESC EFFHDPSMKS SHEGQVKKSL SVTPLGNDSG YFLNITVLNN  240
LQKTTERLSL PISKAEFTVM RTALSFALPH ILGWDQALTN HQPSPSPASK PRVERPHPDS  300
EWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A7e-711192818169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B7e-711192818169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C7e-711192818169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D7e-711192818169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627387.11e-162single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0344e-73WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0E0NA490.0A0A0E0NA49_ORYRU; Uncharacterized protein
STRINGORUFI02G04590.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-72WHIRLY 2