PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G02360.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 716aa MW: 80091.8 Da PI: 7.2603

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G02360.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	171.8	3.6e-53	57	208	1	142
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 gg+g++++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl ++++ g ++ +s+e+ ORUFI02G02360.2 57 GGGGEREREREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVET 150 68999********************************************************************998999*********** PP DUF822 93 slq.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsv 142 ++ s+l+s+a+ +p++s+++++++++++spsslds+ +a++ ++ +v+s ORUFI02G02360.2 151 PSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsiknekyGNSDSVSSL 208 99899********************************9987766655444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.4E-49	58	211	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	1.4E-171	229	676	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	3.51E-173	229	709	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	2.7E-80	254	619	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-49	267	281	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-49	288	306	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-49	401	423	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-49	474	493	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-49	508	524	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-49	525	536	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-49	543	566	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-49	581	603	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADTSPS PSPSPAAPPP RRRGGGGGGG 60 EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP 120 DGTTFRASSQ PLHPPTPQSP GIFHVNSVET PSFTSVLNSY AIGTPLDSQA SMLQTDDSLS 180 PSSLDSVVVA DQSIKNEKYG NSDSVSSLNC LENHQLTRAS AALAGDYTRT PYIPVYASLP 240 MGIINSHCQL IDPEGIRAEL MHLKSLNVDG VIVDCWWGIV EAWIPHKYEW SGYRDLFGII 300 KEFKLKVQAV LSFHGSGETG SGGVSLPKWV MEIAQENQDV FFTDREGRRN MECLSWGIDK 360 ERVLRGRTGI EAYFDFMRSF HMEFRNLTEE GLISAIEIGL GVSGELKYPS CPERMGWRYP 420 GIGEFQCYDR YMQKNLRQAA LSRGHLFWAR GPDNAGYYNS RPHETGFFCD GGDYDSYYGR 480 FFLNWYSGIL IDHVDQVLSL ATLAFDGVET VVKIPSIYWW YRTASHAAEL TAGFYNPTNR 540 DGYSPVFRML KKHSVILKFV CYGPEFTIQE NNEAFADPEG LTWQVMNSAW DHGLSISVES 600 ALPCLDGEMY SQILDTAKPR HDPDRHHVSF FAYRQLPSFL LQRDVCFSEL GNFVKCMHDG 660 SLIKIVVRVR TIIAHQSGSS ALDVLMQRLT VLCIRGVSTY PIKIIRSRYL TTVIAL

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADTSPS PSPSPAAPPP RRRGGGGGGG  60
EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP  120
DGTTFRASSQ PLHPPTPQSP GIFHVNSVET PSFTSVLNSY AIGTPLDSQA SMLQTDDSLS  180
PSSLDSVVVA DQSIKNEKYG NSDSVSSLNC LENHQLTRAS AALAGDYTRT PYIPVYASLP  240
MGIINSHCQL IDPEGIRAEL MHLKSLNVDG VIVDCWWGIV EAWIPHKYEW SGYRDLFGII  300
KEFKLKVQAV LSFHGSGETG SGGVSLPKWV MEIAQENQDV FFTDREGRRN MECLSWGIDK  360
ERVLRGRTGI EAYFDFMRSF HMEFRNLTEE GLISAIEIGL GVSGELKYPS CPERMGWRYP  420
GIGEFQCYDR YMQKNLRQAA LSRGHLFWAR GPDNAGYYNS RPHETGFFCD GGDYDSYYGR  480
FFLNWYSGIL IDHVDQVLSL ATLAFDGVET VVKIPSIYWW YRTASHAAEL TAGFYNPTNR  540
DGYSPVFRML KKHSVILKFV CYGPEFTIQE NNEAFADPEG LTWQVMNSAW DHGLSISVES  600
ALPCLDGEMY SQILDTAKPR HDPDRHHVSF FAYRQLPSFL LQRDVCFSEL GNFVKCMHDG  660
SLIKIVVRVR TIIAHQSGSS ALDVLMQRLT VLCIRGVSTY PIKIIRSRYL TTVIAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-123	232	658	11	442	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120049	0.0	AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622759.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0E0N9A1	0.0	A0A0E0N9A1_ORYRU; Beta-amylase
STRING	ONIVA02G02260.2	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]