PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G02360.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 801aa    MW: 88243 Da    PI: 6.812
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G02360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822171.35.3e-53572041138
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 
                      gg+g++++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl   ++++ g ++ +s+e+
  ORUFI02G02360.1  57 GGGGEREREREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVET 150
                      68999**********************************************************************998999************* PP

           DUF822  93 slq.sslkssalaspvesysaspksssfpspssldsislasa.......asllp 138
                      ++  s+l+s+a+ +p++s+++++++++++spsslds+ +a++        ++ +
  ORUFI02G02360.1 151 PSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsiknekyGNSDS 204
                      *99899*********************************998666555433344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.7E-4958211IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.802.0E-171314761IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.74E-173314794IPR017853Glycoside hydrolase superfamily
PfamPF013733.6E-80339704IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-49352366IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-49373391IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-49486508IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-49559578IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-49593609IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-49610621IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-49628651IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-49666688IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADTSPS PSPSPAAPPP RRRGGGGGGG  60
EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP  120
DGTTFRASSQ PLHPPTPQSP GIFHVNSVET PSFTSVLNSY AIGTPLDSQA SMLQTDDSLS  180
PSSLDSVVVA DQSIKNEKYG NSDSVSSLNC LENHQPVELE VVLPPPLAAL LVCGSTVVQL  240
MGGSMAGSAD GHPEEEQRER SGDGRVGACA GAAAGAEPVP AAVHSSSSHA VSAVIAAIGS  300
LTRASAALAG DYTRTPYIPV YASLPMGIIN SHCQLIDPEG IRAELMHLKS LNVDGVIVDC  360
WWGIVEAWIP HKYEWSGYRD LFGIIKEFKL KVQAVLSFHG SGETGSGGVS LPKWVMEIAQ  420
ENQDVFFTDR EGRRNMECLS WGIDKERVLR GRTGIEAYFD FMRSFHMEFR NLTEEGLISA  480
IEIGLGVSGE LKYPSCPERM GWRYPGIGEF QCYDRYMQKN LRQAALSRGH LFWARGPDNA  540
GYYNSRPHET GFFCDGGDYD SYYGRFFLNW YSGILIDHVD QVLSLATLAF DGVETVVKIP  600
SIYWWYRTAS HAAELTAGFY NPTNRDGYSP VFRMLKKHSV ILKFVCYGPE FTIQENNEAF  660
ADPEGLTWQV MNSAWDHGLS ISVESALPCL DGEMYSQILD TAKPRHDPDR HHVSFFAYRQ  720
LPSFLLQRDV CFSELGNFVK CMHDGSLIKI VVRVRTIIAH QSGSSALDVL MQRLTVLCIR  780
GVSTYPIKII RSRYLTTVIA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12231774311442Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0E0N9A00.0A0A0E0N9A0_ORYRU; Beta-amylase
STRINGORUFI02G02360.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]