PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G00390.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 483aa MW: 53616.7 Da PI: 7.8989 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.9e-27 | 50 | 99 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s ORUFI02G00390.2 50 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFAS 99 8***********************************************86 PP | |||||||
2 | K-box | 72.7 | 1.1e-24 | 123 | 214 | 8 | 99 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ee+ ++++ e++ L k+ie ++ + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr + + ORUFI02G00390.2 123 EGEESCVQKWRSEATTLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQCK 214 3678889*********************************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00265 | 4.73E-35 | 32 | 118 | No hit | No description |
SMART | SM00432 | 1.8E-35 | 41 | 100 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.716 | 41 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 43 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 43 | 97 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-29 | 43 | 119 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.9E-26 | 50 | 97 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 63 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 78 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-24 | 126 | 213 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.808 | 129 | 219 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MAAAAAGMGG GGGVQHQETT TTVVQVAAEA SRKKVEVRSA GRRGRREMRR IEDATSRQVT 60 FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGRLYQFASA SSDLQRTIDR YLNHTKNSSA 120 HEEGEESCVQ KWRSEATTLG KKIEAIEGYK SKLLGEGLGS CSVQELQELE VQLEKSLCSI 180 RQKKQKMLMD QILELREKEM NLLKENMVLR DQCKALSSPW STSVGELKNK QADDDVHRHE 240 DYSGGGVRDD DDRRMMEDVE TDLAAANQAG KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK 300 ALANSAAIIS ELEKKKQKKR EEQQRLDEEG AAIAEAVALH VLIGEDSDEP CHLMLNKHRR 360 CNHWDHSAGF DFAVDAQGAD IYPPDGLIQC ADHVYAPKGR CIDWGIGQPL PSWGEVKDLQ 420 LQAPCYQGMF HQSVACPGFI AAQAVSSLQI GGDSSDITSP SQGATVVNRM LGATNRLNLY 480 REI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 3e-16 | 43 | 122 | 2 | 76 | Myocyte-specific enhancer factor 2B |
1n6j_B | 3e-16 | 43 | 122 | 2 | 76 | Myocyte-specific enhancer factor 2B |
1tqe_P | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-16 | 43 | 122 | 3 | 77 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 296 | KKKQAKDELDRQKQAEKKRRR |
2 | 293 | 297 | KRRRL |
3 | 294 | 317 | RRRLEKALANSAAIISELEKKKQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121824 | 0.0 | AK121824.1 Oryza sativa Japonica Group cDNA clone:J033099F22, full insert sequence. | |||
GenBank | AP004049 | 0.0 | AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06. | |||
GenBank | AP006720 | 0.0 | AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625202.1 | 0.0 | MADS-box protein SOC1 isoform X1 | ||||
TrEMBL | A0A0E0N8J5 | 0.0 | A0A0E0N8J5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G00390.2 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3805 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-48 | AGAMOUS-like 20 |