PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G46010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 418aa    MW: 43783.6 Da    PI: 6.1357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G46010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12224266754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  ORUFI01G46010.1 224 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 266
                      79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16220283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9223266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-16224279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-13224270No hitNo description
CDDcd048731.20E-4338398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MASLLGLLFS SLLFSERCEA RRRARSGGEV AMDEAEAAAA AAKMDELAGG GGGGGGDWSY  60
LAADALAAAS FTAFPLHHHH HRDVLSASTP SSLLLNMDAA TAAAMFDFQA AFPSSSVPPP  120
PPTTTAALPP FHDFASSNPF DDAPPPFLAP PGQKLGFLGP PGGAFGGGMG WDDDDEIEQS  180
VDASSMGVSA SLENAAPVAA GGGGGGGGGG GRGKKKGMPA KNLMAERRRR KKLNDRLYML  240
RSVVPKISKM DRASILGDAI EYLKELLQRI NDLHNELESA PSSSLTGPSS ASFHPSTPTL  300
QTFPGRVKEE LCPTSFPSPS GQQATVEVRM REGHAVNIHM FCARRPGILM STLRALDSLG  360
LGIEQAVISC FNGFAMDVFR AEQCRDGPGL GPEEIKTVLL HSAGLQNAMR TDEMRLAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213231KKKGMPAKNLMAERRRRKK
2225232ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025940.0AK102594.1 Oryza sativa Japonica Group cDNA clone:J033098G23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651003.10.0transcription factor ICE1
TrEMBLA0A0E0N7390.0A0A0E0N739_ORYRU; Uncharacterized protein
STRINGORUFI01G46010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-93bHLH family protein