PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G45940.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 316aa    MW: 33467.4 Da    PI: 7.9783
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G45940.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.6e-242394171
         trihelix  1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
                     rWt++e+l+L++arr me+r rr+ +    +W++vs+++r++g+er+p qC+++w nl+++ kki ++ek+ 
  ORUFI01G45940.2 23 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNL 94
                     8**********************97764889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.981681IPR017877Myb-like domain
SuperFamilySSF466895.38E-52083IPR009057Homeodomain-like
PfamPF138373.5E-102391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010216Biological Processmaintenance of DNA methylation
GO:0051567Biological Processhistone H3-K9 methylation
GO:0005634Cellular Componentnucleus
GO:0005694Cellular Componentchromosome
GO:0008270Molecular Functionzinc ion binding
GO:0008327Molecular Functionmethyl-CpG binding
GO:0010385Molecular Functiondouble-stranded methylated DNA binding
GO:0010428Molecular Functionmethyl-CpNpG binding
GO:0010429Molecular Functionmethyl-CpNpN binding
GO:0042393Molecular Functionhistone binding
GO:0046974Molecular Functionhistone methyltransferase activity (H3-K9 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSGAANATSP AAGAGTPRSR LPRWTRHETL VLLQARRAME HRGRRSPQPV RLKWAAVSAY  60
CRRHGVERGP MQCRKRWGNL SWDLKKIVAW EKNLAAVVSG AGDNAVAAGE GEGEAPPPPR  120
LESFWDMRGE QRRARQLPSS FDREVYDALV GGHGAAPPSD FGEDLADGDG VDADELPPPP  180
LMVMPISARK YVPPTASSQQ ECSDPATVSA KRGGAASDKN STSQHDGGGG GGLKDSEATY  240
GAGVGGEEGT TTATATATTT SIGRQVIEAL ERGNRMLGDQ LEAQRAAWDA EREQRVALLA  300
AVDKLAGAVC RIADKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629515.10.0trihelix transcription factor ASR3
TrEMBLA0A0E0N7260.0A0A0E0N726_ORYRU; Uncharacterized protein
STRINGOGLUM01G46800.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-43Trihelix family protein