PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G45310.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 1225aa MW: 136056 Da PI: 6.7573

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G45310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.5e-18	1155	1210	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rk+ ++++eql++Le+++e +++++++ ++ LA+kl+++ rqV vWFqNrRa+ k+ ORUFI01G45310.1 1155 RKKLRLSEEQLTVLENMYEADSNLDQALKQGLAEKLNIKPRQVEVWFQNRRARTKH 1210 778899***********************************************995 PP
2	HD-ZIP_I/II	79.9	3.9e-26	1155	1218	1	64
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64 +kk+rls+eq+++LE+++e++++L++ K+ la++L+++prqv+vWFqnrRARtk kq+E++++ ORUFI01G45310.1 1155 RKKLRLSEEQLTVLENMYEADSNLDQALKQGLAEKLNIKPRQVEVWFQNRRARTKHKQIEEECK 1218 69************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00862	8.3E-12	197	461	IPR000368	Sucrose synthase
TIGRFAMs	TIGR02468	0	200	1079	IPR012819	Sucrose phosphate synthase, plant
CDD	cd03800	4.85E-159	201	691	No hit	No description
SuperFamily	SSF53756	7.85E-69	212	691	No hit	No description
Pfam	PF00534	9.5E-27	500	673	IPR001296	Glycosyl transferase, family 1
Gene3D	G3DSA:3.40.50.2000	2.5E-21	500	675	No hit	No description
Pfam	PF05116	2.4E-16	835	1035	IPR006380	Sucrose-phosphatase, N-terminal
Gene3D	G3DSA:1.10.10.60	5.2E-16	1143	1211	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.25E-16	1145	1212	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.277	1151	1211	IPR001356	Homeobox domain
SMART	SM00389	1.8E-15	1153	1215	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-15	1155	1210	IPR001356	Homeobox domain
CDD	cd00086	5.07E-15	1155	1212	No hit	No description
PROSITE pattern	PS00027	0	1186	1209	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005985	Biological Process	sucrose metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005794	Cellular Component	Golgi apparatus
GO:0016157	Molecular Function	sucrose synthase activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046524	Molecular Function	sucrose-phosphate synthase activity

Sequence ? help Back to Top
Protein Sequence Length: 1225 aa Download sequence Send to blast
MAGNEWINGY LEAILDSGGA AGGGGGGGGG GGGGGGGGGG GGGGGVDPRS PAAGAASPRG 60 PHMNFNPTHY FVEEVVKGVD ESDLHRTWIK LELEGILRIS ARRKEQEQVR RETSEDLAED 120 LFEGEKADTV GELVQQDTPM KKKFQRNFSE LTVSWSDENK EKKLYIVLIR SYTAYFTHWC 180 YSVYATKLQN FTEFLCSLFY FSLHGLVRGD NMELGRDSDT GGQVKYVVEL ARALAMMPGV 240 YRVDLFTRQV SSPEVDWSYG EPTEMLTSGS TDGEGSGESA GAYIVRIPCG PRDKYLRKEA 300 LWPYLQEFVD GALAHILNMS KALGEQVSNG KVVLPYVIHG HYADAGDVAA LLSGALNVPM 360 VLTGHSLGRN KLEQIMKQGR MSKEEIDSTY KIMRRIEGEE LALDAAELVI TSTRQEIDEQ 420 WGLYDGFDVK LEKVLRARAR RGVSCHGRFM PRMVVIPPGM DFSSVVVPED ISDGDDGKEF 480 EIASPRSLPP IWAEVMRFLT NPHKPMILAL SRPDPKKNIT TLVKAFGECR PLRELANLIL 540 IMGNRDDIDE MSAGNASVLT TVLKLIDKYD LYGSVAFPKH HKQSDVPEIY RLTGKMKGVF 600 INPALVEPFG LTLIEAAAHG LPTVATKNGG PVDIKNALNN GLLVDPHDQH AISDALLKLV 660 ADKNLWQECR KNGLRNIQLY SWPEHCRTYL TRIAGCRIRN PRWLMDTPAD AAAEEEEALE 720 DSLMDVQDLS LRLSIDGERG SSMNDAPSSD PQDSVQRIMN KIKRSSPADT DGAKIPAEAT 780 ATATAGAMNK YPLLRRRRRL FVIAVDCYGD DGSASKRMLQ VIQEVFRAVR SDSQMSRISG 840 FALSTAMPLP ETLKLLQLGK IPPTDFDALI CGSGSEVYYP GTAQCVDAGG RLRPDQDYLL 900 HINHRWSHDG AKQTIAKLAH DGSGTNVEPD VESCNPHCVS FFIKDPNKVR TIDEMRERMR 960 MRGLRCHLMY CRNATRLQVV PLLASRSQAL RYLFVRWGLS VGNMYLIVGE HGDTDHEEML 1020 SGLHKTVIIR GVTEKGSEQL VRSSGSYQRE DVVPSESPLI AFTKGDLKAD EIMRALKEVT 1080 KAASGMDWQR PLCKTAYWFQ SRVYTNMEEE EMTMLSLGVG AASKHSISNR KFRLKEVTDH 1140 KFNPGDQDHN SGHARKKLRL SEEQLTVLEN MYEADSNLDQ ALKQGLAEKL NIKPRQVEVW 1200 FQNRRARTKH KQIEEECKNR GGWRA

Sequence ? help Back to Top

Protein Sequence Length: 1225 aa Download sequence Send to blast

MAGNEWINGY LEAILDSGGA AGGGGGGGGG GGGGGGGGGG GGGGGVDPRS PAAGAASPRG  60
PHMNFNPTHY FVEEVVKGVD ESDLHRTWIK LELEGILRIS ARRKEQEQVR RETSEDLAED  120
LFEGEKADTV GELVQQDTPM KKKFQRNFSE LTVSWSDENK EKKLYIVLIR SYTAYFTHWC  180
YSVYATKLQN FTEFLCSLFY FSLHGLVRGD NMELGRDSDT GGQVKYVVEL ARALAMMPGV  240
YRVDLFTRQV SSPEVDWSYG EPTEMLTSGS TDGEGSGESA GAYIVRIPCG PRDKYLRKEA  300
LWPYLQEFVD GALAHILNMS KALGEQVSNG KVVLPYVIHG HYADAGDVAA LLSGALNVPM  360
VLTGHSLGRN KLEQIMKQGR MSKEEIDSTY KIMRRIEGEE LALDAAELVI TSTRQEIDEQ  420
WGLYDGFDVK LEKVLRARAR RGVSCHGRFM PRMVVIPPGM DFSSVVVPED ISDGDDGKEF  480
EIASPRSLPP IWAEVMRFLT NPHKPMILAL SRPDPKKNIT TLVKAFGECR PLRELANLIL  540
IMGNRDDIDE MSAGNASVLT TVLKLIDKYD LYGSVAFPKH HKQSDVPEIY RLTGKMKGVF  600
INPALVEPFG LTLIEAAAHG LPTVATKNGG PVDIKNALNN GLLVDPHDQH AISDALLKLV  660
ADKNLWQECR KNGLRNIQLY SWPEHCRTYL TRIAGCRIRN PRWLMDTPAD AAAEEEEALE  720
DSLMDVQDLS LRLSIDGERG SSMNDAPSSD PQDSVQRIMN KIKRSSPADT DGAKIPAEAT  780
ATATAGAMNK YPLLRRRRRL FVIAVDCYGD DGSASKRMLQ VIQEVFRAVR SDSQMSRISG  840
FALSTAMPLP ETLKLLQLGK IPPTDFDALI CGSGSEVYYP GTAQCVDAGG RLRPDQDYLL  900
HINHRWSHDG AKQTIAKLAH DGSGTNVEPD VESCNPHCVS FFIKDPNKVR TIDEMRERMR  960
MRGLRCHLMY CRNATRLQVV PLLASRSQAL RYLFVRWGLS VGNMYLIVGE HGDTDHEEML  1020
SGLHKTVIIR GVTEKGSEQL VRSSGSYQRE DVVPSESPLI AFTKGDLKAD EIMRALKEVT  1080
KAASGMDWQR PLCKTAYWFQ SRVYTNMEEE EMTMLSLGVG AASKHSISNR KFRLKEVTDH  1140
KFNPGDQDHN SGHARKKLRL SEEQLTVLEN MYEADSNLDQ ALKQGLAEKL NIKPRQVEVW  1200
FQNRRARTKH KQIEEECKNR GGWRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2r60_A	2e-52	219	693	31	456	Glycosyl transferase, group 1
2r66_A	2e-52	219	693	31	456	Glycosyl transferase, group 1
2r68_A	2e-52	219	693	31	456	Glycosyl transferase, group 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	793	799	LRRRRRL
2	1203	1211	RRARTKHKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation (By similarity). {ECO:0000250}.
UniProt	Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulated, with the highest expression 1 hour before the beginning of light period (in 14 hours light/10 hours dark cycle). {ECO:0000269\|PubMed:21683881}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121341	0.0	AK121341.1 Oryza sativa Japonica Group cDNA clone:J023120M11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621705.1	0.0	probable sucrose-phosphate synthase 1
Refseq	XP_015621706.1	0.0	probable sucrose-phosphate synthase 1
Swissprot	A2WYE9	0.0	SPSA1_ORYSI; Probable sucrose-phosphate synthase 1
Swissprot	Q0JGK4	0.0	SPSA1_ORYSJ; Probable sucrose-phosphate synthase 1
TrEMBL	A0A0E0N6U8	0.0	A0A0E0N6U8_ORYRU; Uncharacterized protein
STRING	ORUFI01G45310.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP906	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-18	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Chávez-Bárcenas AT, et al. Tissue-specific and developmental pattern of expression of the rice sps1 gene. Plant Physiol., 2000. 124(2): p. 641-54 [PMID:11027714] Nakano H,Makino A,Mae T The Effect of Elevated Partial Pressures of CO2 on the Relationship between Photosynthetic Capacity and N Content in Rice Leaves. Plant Physiol., 1997. 115(1): p. 191-198 [PMID:12223799] Makino A,Nakano H,Mae T Responses of Ribulose-1,5-Bisphosphate Carboxylase, Cytochrome f, and Sucrose Synthesis Enzymes in Rice Leaves to Leaf Nitrogen and Their Relationships to Photosynthesis. Plant Physiol., 1994. 105(1): p. 173-179 [PMID:12232197] Ishimaru K,Ono K,Kashiwagi T Identification of a new gene controlling plant height in rice using the candidate-gene strategy. Planta, 2004. 218(3): p. 388-95 [PMID:14534788] Ding J, et al. Validation of a rice specific gene, sucrose phosphate synthase, used as the endogenous reference gene for qualitative and real-time quantitative PCR detection of transgenes. J. Agric. Food Chem., 2004. 52(11): p. 3372-7 [PMID:15161200] Jha AB,Dubey RS Carbohydrate metabolism in growing rice seedlings under arsenic toxicity. J. Plant Physiol., 2004. 161(7): p. 867-72 [PMID:15310076] Yang L, et al. Estimating the copy number of transgenes in transformed rice by real-time quantitative PCR. Plant Cell Rep., 2005. 23(10-11): p. 759-63 [PMID:15459795] Lutfiyya LL, et al. Phylogenetic and expression analysis of sucrose phosphate synthase isozymes in plants. J. Plant Physiol., 2007. 164(7): p. 923-33 [PMID:16876912] Ishimaru K,Hirotsu N,Madoka Y,Kashiwagi T Quantitative trait loci for sucrose, starch, and hexose accumulation before heading in rice. Plant Physiol. Biochem., 2007 Oct-Nov. 45(10-11): p. 799-804 [PMID:17845859] Li JY, et al. Effects of elevated CO2 on growth, carbon assimilation, photosynthate accumulation and related enzymes in rice leaves during sink-source transition. J Integr Plant Biol, 2008. 50(6): p. 723-32 [PMID:18713413] Pattanagul W,Thitisaksakul M Effect of salinity stress on growth and carbohydrate metabolism in three rice (Oryza sativa L.) cultivars differing in salinity tolerance. Indian J. Exp. Biol., 2008. 46(10): p. 736-42 [PMID:19024173] Jiang L, et al. International collaborative study of the endogenous reference gene, sucrose phosphate synthase (SPS), used for qualitative and quantitative analysis of genetically modified rice. J. Agric. Food Chem., 2009. 57(9): p. 3525-32 [PMID:19326953] Ohara K,Sasaki K,Yazaki K Two solanesyl diphosphate synthases with different subcellular localizations and their respective physiological roles in Oryza sativa. J. Exp. Bot., 2010. 61(10): p. 2683-92 [PMID:20421194] Sharma S, et al. Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses. BMC Plant Biol., 2010. 10: p. 134 [PMID:20591144] Wang C, et al. Evaluation of four genes in rice for their suitability as endogenous reference standards in quantitative PCR. J. Agric. Food Chem., 2010. 58(22): p. 11543-7 [PMID:20961039] Okamura M, et al. Tissue specificity and diurnal change in gene expression of the sucrose phosphate synthase gene family in rice. Plant Sci., 2011. 181(2): p. 159-66 [PMID:21683881] Zhu C, et al. The temporal and species dynamics of photosynthetic acclimation in flag leaves of rice (Oryza sativa) and wheat (Triticum aestivum) under elevated carbon dioxide. Physiol Plant, 2012. 145(3): p. 395-405 [PMID:22268610] Mishra P,Dubey RS Excess nickel modulates activities of carbohydrate metabolizing enzymes and induces accumulation of sugars by upregulating acid invertase and sucrose synthase in rice seedlings. Biometals, 2013. 26(1): p. 97-111 [PMID:23179408] Saad AS, et al. A rice stress-responsive NAC gene enhances tolerance of transgenic wheat to drought and salt stresses. Plant Sci., 2013. 203-204: p. 33-40 [PMID:23415326] Yonekura M, et al. The promoter activities of sucrose phosphate synthase genes in rice, OsSPS1 and OsSPS11, are controlled by light and circadian clock, but not by sucrose. Front Plant Sci, 2013. 4: p. 31 [PMID:23460029] Choudhury B,Mitra S,Biswas AK Regulation of sugar metabolism in rice (Oryza sativa L.) seedlings under arsenate toxicity and its improvement by phosphate. Physiol Mol Biol Plants, 2010. 16(1): p. 59-68 [PMID:23572955] Hirose T, et al. Analysis of gene-disruption mutants of a sucrose phosphate synthase gene in rice, OsSPS1, shows the importance of sucrose synthesis in pollen germination. Plant Sci., 2014. 225: p. 102-6 [PMID:25017165] Zhang F,Wang L,Wang R,Ying Y,Wu J Simple screening strategy with only water bath needed for the identification of insect-resistant genetically modified rice. Anal. Chem., 2015. 87(3): p. 1523-6 [PMID:25582220] Wang X,Chen X,Xu J,Dai C,Shen W Degradation and detection of transgenic Bacillus thuringiensis DNA and proteins in flour of three genetically modified rice events submitted to a set of thermal processes. Food Chem. Toxicol., 2015. 84: p. 89-98 [PMID:26277627] Li L, et al. A novel reference plasmid for the qualitative detection of genetically modified rice in food and feed. Biomed Res Int, 2015. 2015: p. 948297 [PMID:26495318] Valdez-Alarcón JJ,Ferrando M,Salerno G,Jimenez-Moraila B,Herrera-Estrella L Characterization of a rice sucrose-phosphate synthase-encoding gene. Gene, 1996. 170(2): p. 217-22 [PMID:8666248]