PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G44570.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 285aa    MW: 30631.8 Da    PI: 4.1498
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G44570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.6e-06259282123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      + C++C+k Fs+  +L++H++  H
  ORUFI01G44570.1 259 HACKYCSKAFSSDKSLRSHQKArH 282
                      67******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-4258279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531259285IPR007087Zinc finger, C2H2
PROSITE patternPS000280261282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEFWGIEVKP GKAVSFNVDD ECVIHISQVA LGETKKAGSE NVVVSVKVDG KKTVIGNLSA  60
KNHPQFMCDL FIGNDFELSH SSKTTSVFLC DEDENMSDIC DIMGKHLGRP VAEEGKKDNS  120
DDGMDLSSSD DDDDSLDSSS SDDDDDESGD EDDGSDELPA EMESSEEEDG SDGQDESSSS  180
MVSTDEEDES DEEDEIPEKP ESSKLTAAGS TLSSGKKSKT ATHFGQKTGD KNTHPAKEDG  240
KTPAISKPNK ETPESSGTHA CKYCSKAFSS DKSLRSHQKA RHPAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034161e-100AP003416.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0456E05.
GenBankAP0149571e-100AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-100CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645623.11e-156histone deacetylase HDT2
TrEMBLA0A0E0N6J10.0A0A0E0N6J1_ORYRU; Uncharacterized protein
STRINGORUFI01G44570.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-21histone deacetylase 3