PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G44560.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 293aa MW: 31974.9 Da PI: 4.5146

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G44560.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	266	289	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+k+F++++ L+ H + H ORUFI01G44560.2 266 YACKPCNKTFNTSMGLEAHSKAkH 289 78999**************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	12.196	266	293	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	268	289	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
METTMGFWGV AVRPGETVMC DPPGEFYYHI SQIALEPGEL NENVQVFGEV DGKRILLGTL 60 SVEHRDESDE EVPLAIPLFP NSDDDKIKEV QNSPSKFATL KSAAAASPTP EAIVEERKNY 120 GKSEADDDDS DEESDASGED EYDDDEDMID KQDSSDDDGD SSDEEETPSK NTKGTNRHVE 180 TPLNTPPQKR ARLATPIMDS KAGTGKRSGY VHVATPYPAK QAKKTPVNND MAKQSSGYVH 240 VATPYPAKQA KKRTANNDMS EHSAGYACKP CNKTFNTSMG LEAHSKAKHT ATK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241121	1e-177	AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015694821.1	1e-123	PREDICTED: histone deacetylase HDT2-like
TrEMBL	A0A0E0N6J0	0.0	A0A0E0N6J0_ORYRU; Uncharacterized protein
STRING	OBART01G41230.2	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	4e-11	histone deacetylase 2C