PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G44560.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 321aa    MW: 35023.3 Da    PI: 4.3755
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G44560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013294317123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ C+k+F++++ L+ H +  H
  ORUFI01G44560.1 294 YACKPCNKTFNTSMGLEAHSKAkH 317
                      78999**************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.196294321IPR007087Zinc finger, C2H2
PROSITE patternPS000280296317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
METTMGFWGV AVRPGETVMC DPPGEFYYHI SQIALEPGEL NENVQVFGEV DGKRILLGTL  60
SVEHRPQLSI DLEYFSLTFC LAVCTSDSPT EEGDESDEEV PLAIPLFPNS DDDKIKEVQN  120
SPSKFATLKS AAAASPTPEA IVEERKNYGK SEADDDDSDE ESDASGEDEY DDDEDMIDKQ  180
DSSDDDGDSS DEEETPSKNT KGTNRHVETP LNTPPQKRAR LATPIMDSKA GTGKRSGYVH  240
VATPYPAKQA KKTPVNNDMA KQSSGYVHVA TPYPAKQAKK RTANNDMSEH SAGYACKPCN  300
KTFNTSMGLE AHSKAKHTAT K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411210.0AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694821.11e-137PREDICTED: histone deacetylase HDT2-like
TrEMBLA0A0E0N6I90.0A0A0E0N6I9_ORYRU; Uncharacterized protein
STRINGORUFI01G44560.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-11histone deacetylase 2C