PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G44010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 316aa    MW: 33280.9 Da    PI: 7.556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G44010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-12250295655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  + +++L  Av YIk+Lq
  ORUFI01G44010.1 250 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVTYIKELQ 295
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-15247304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-11248299No hitNo description
Gene3DG3DSA:4.10.280.106.7E-15249305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9250295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVGRYFSAES SGLTSCESSC RTTTTTSTAA AADVGRHPLE RAYGGSGEIH VDASSAAVPL  60
FRHSSSPAGL LSRLMADPHG NGMAATRGMG GYSGGGGDAG AMAHRRLSSQ WSFSRQDLPQ  120
ISEMGGLIPD IGESIVTGGG GNSSSDGAGH GAQSSSFLSS RNFSMSSWDD TNSIMFSPPS  180
SSKKARVAAA AAGDHGDDMV SSFSNIDSQF GLSKQSSLEM AGMDDFLQLQ PDSVACRARA  240
KRGCATHPRS IAERERRTRI SKRLKKLQDL VPNMDKQTNT SDMLDIAVTY IKELQGQVEK  300
LKHDQANCTC SGKHDC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682540.0AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613853.10.0transcription factor bHLH128
TrEMBLA0A0E0N6B90.0A0A0E0N6B9_ORYRU; Uncharacterized protein
STRINGORUFI01G44010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-45bHLH family protein