PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G43320.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 304aa    MW: 32073.2 Da    PI: 9.3863
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G43320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.59.9e-4357155199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v++i+ lq++l+ql+++l
  ORUFI01G43320.1  57 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDL 150
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      a++k 
  ORUFI01G43320.1 151 ARAKF 155
                      99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.33256157IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-4257153IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDMDEWAYVS RNLNEKARRM ASSSASSVPA PSGSVITIAS ASASAAANTA ACGTGSPCAA  60
CKFLRRKCQP DCVFAPYFPP DNPQKFVHVH RVFGASNVTK LLNELHPYQR EDAVNSLAYE  120
ADMRLRDPVY GCVAIISILQ RNLRQLQQDL ARAKFELSKY QQAAAAAAAA SASTGTNNGP  180
HSMAEFIGNA VPNGAQSFIN VGHSAALASV GGAAACFGQE QQFSAVHMLS RSYEGEPIAR  240
LGGNGGYEFG YSTSMAGGGH MSGLGALGGA PFLKSGIAGS DERQGAGQLL TRKLKFPKFW  300
KLKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-53531607114LOB family transfactor Ramosa2.1
5ly0_B4e-53531607114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
UniProtNegative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195750.0AK119575.1 Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634701.10.0LOB domain-containing protein 6
SwissprotA2WXT00.0LBD6_ORYSI; LOB domain-containing protein 6
SwissprotQ8LQH40.0LBD6_ORYSJ; LOB domain-containing protein 6
TrEMBLA0A0E0N6260.0A0A0E0N626_ORYRU; Uncharacterized protein
STRINGORUFI01G43320.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.45e-54LBD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]