PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G41780.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 329aa MW: 34761.5 Da PI: 4.5977

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G41780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.9	4.7e-38	32	89	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ ORUFI01G41780.1 32 AAPNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 89 5679***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-32	16	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-32	33	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MLSSSHHEAM LPYAPRPPSL LVDRRYKQGA EAAPNCPRCD SPNTKFCYYN NYSLSQPRYF 60 CKGCRRYWTK GGSLRNVPVG GGCRKNRRGK SSSSARSAAD AVSSGRDAAF GHRFPGPVRP 120 DMVLEGMVGN PANPGQAMPD VAAAADGSTI DLAMLYAKFL NHPPTDAGLG AVTPESGGHV 180 DEAFDTFSAS SDLSPGILAA ASAQFDPNQD GFGEWSSPAS GNDPTSTATT ATTSMLCTDA 240 SVQAALGELN FAMDQSCFDS LGLPTDVAGA GSLSSWCSIV PSLSTWEEPK YDSLDSFPDD 300 AMSLHECMIG APDHDWSVDC QGLEALYMP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003270	0.0	AP003270.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0505D12.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646108.1	0.0	dof zinc finger protein 4-like
TrEMBL	A0A0E0FW46	0.0	A0A0E0FW46_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0N5H1	0.0	A0A0E0N5H1_ORYRU; Uncharacterized protein
TrEMBL	A0A0P0VAX4	0.0	A0A0P0VAX4_ORYSJ; Os01g0865800 protein
STRING	ORUFI01G41780.1	0.0	(Oryza rufipogon)
STRING	OS01T0865800-00	0.0	(Oryza sativa)
STRING	ONIVA01G43090.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-29	Dof family protein