PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G41760.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 884aa    MW: 95389.8 Da    PI: 6.2502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G41760.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000276877241355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  ORUFI01G41760.2 687 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 724
                      77899************6.....5899999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-197157IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.09E-4668725No hitNo description
PROSITE profilePS5088810.594674723IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-4687727IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-5687728IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHSHDRVD ALVHKAMAQQ VHVVGEGVIG  120
QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQVM EEAAFIDHVR SLFQQLGSST  180
AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHS EDLAGGGNTY NDDMINHQFR HQKSPASTIQ  240
SFNPVQQFYA GPTFCRPVTI ASRCDLFQPD HGSTFTLNSQ SEDNRSTALL KNSVSHFKTS  300
NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI TIGRTASSSC TGKTNIINKV  360
DDLLSQDCLV GCQASNATSV NRKFQTMSIV DNTKLQDGSY AIPHAALVDS TQYSDCFQSL  420
LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN SSDLAELLAS PIPLELTGGN  480
DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC VDDDFTGLIT EADPDQLLDA  540
IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG PSSGPIFCNF ASVAPVAIKT  600
EGPAAGSRQS SSSIDKSAGC SQTQESYKSQ IRLWVENNHS VGSDSLSTGQ ASDSLSTGQC  660
KRSDEIGKSN RKRSRPGESA RPRPKDRQMI QDRIKELREI VPNSAKCSID TLLEKTIKHM  720
LFLQNVAKHA DKLKGSGEPK IVSHEEGLLL KDNFEGGATW AFEVGTRSMT CPIIVEDLNP  780
PRQMLVEMLC KERGIFLEIA DQIRGLGLTI LKGVMEVRKD KIWARFAVEA NKDVTRMEIF  840
LSLVHLLEPS TGSSILSAGV ENTSLPRDSF FPSSIPATGF SNCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680330.0AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLA0A0E0N5G90.0A0A0E0N5G9_ORYRU; Uncharacterized protein
STRINGORUFI01G41760.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.15e-55conserved peptide upstream open reading frame 7