PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G41330.6

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 509aa MW: 56505.4 Da PI: 7.2965

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G41330.6	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.2e-11	190	220	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ ORUFI01G41330.6 190 AKTERRLAQNREAARKSRLRKKAYVQNLETS 220 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-6	187	263	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	189	233	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.3E-8	190	221	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-7	191	235	No hit	No description
CDD	cd14708	3.03E-20	191	243	No hit	No description
SuperFamily	SSF57959	6.47E-7	191	234	No hit	No description
PROSITE pattern	PS00036	0	194	209	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-29	272	346	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MSSVRYCLGR DFQPAAAAAA YFGELEEALI HGANAGGVVD PGMIRADVHS KSAAAAATAG 60 YLAARPPTLE IFPSWPMRQQ QQLHSGNSQS VGSTTDSSSA QNTMPQMELV SPASIRASSE 120 HQHQQQQPGQ EVMMVTTDDY SYKPGLAAAS PSFQQQHQLQ HHQQQQLHGG GDHDKRKHGS 180 TRKDGKSVDA KTERRLAQNR EAARKSRLRK KAYVQNLETS RVRLQQIEQE LQRARSQGLF 240 LGGCRAAGDM SSGAAMFDME YARWLDDDSK RLTDLRGGLQ AHLLDTNLGL IVEECMQHYD 300 ELFQLKAALA RSDVFHLLTG TWATPAERCF LWMGGFRPSD LLKILIQQLD PLTEQQMLGI 360 YSLQQSSEQA EEALAQGLQQ LHQSLADTVA AGTLNDGPGV PNYMSLMAIA LDKLASLESF 420 YQQVTNLANV QADNLRQQTL HQLRRILTTR QAARCFLSIG EYYRRLRALS NLWSSRPREN 480 FIGTESVSPT GTELQPMHNQ PQQNQYSGF

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MSSVRYCLGR DFQPAAAAAA YFGELEEALI HGANAGGVVD PGMIRADVHS KSAAAAATAG  60
YLAARPPTLE IFPSWPMRQQ QQLHSGNSQS VGSTTDSSSA QNTMPQMELV SPASIRASSE  120
HQHQQQQPGQ EVMMVTTDDY SYKPGLAAAS PSFQQQHQLQ HHQQQQLHGG GDHDKRKHGS  180
TRKDGKSVDA KTERRLAQNR EAARKSRLRK KAYVQNLETS RVRLQQIEQE LQRARSQGLF  240
LGGCRAAGDM SSGAAMFDME YARWLDDDSK RLTDLRGGLQ AHLLDTNLGL IVEECMQHYD  300
ELFQLKAALA RSDVFHLLTG TWATPAERCF LWMGGFRPSD LLKILIQQLD PLTEQQMLGI  360
YSLQQSSEQA EEALAQGLQQ LHQSLADTVA AGTLNDGPGV PNYMSLMAIA LDKLASLESF  420
YQQVTNLANV QADNLRQQTL HQLRRILTTR QAARCFLSIG EYYRRLRALS NLWSSRPREN  480
FIGTESVSPT GTELQPMHNQ PQQNQYSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616943.1	0.0	transcription factor LG2 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0E0N5B3	0.0	A0A0E0N5B3_ORYRU; Uncharacterized protein
STRING	OS01T0859500-01	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-128	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]