PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G41290.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 374aa MW: 41040.1 Da PI: 6.4025

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G41290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.7e-06	214	233	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ ORUFI01G41290.1 214 FICHVCNKTFNRYNNMQMHM 233 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.55E-5	210	237	No hit	No description
PROSITE profile	PS50157	10.201	214	241	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-5	214	233	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	216	236	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.75E-5	282	318	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MGLRTCSAME GEVVAASPFF EWLKPPPRPA SSSSWSSSFS SSSSMASRDQ ETVVPGEDGG 60 GEIQEDHKSG MTCLPLLSML EEGNSKRHEH PVKEEIMSSA HAAGVVEPGV ELNIGLPVTG 120 SSAQEVTMEE DDEEEDDDDV GEEEMDEWKP MHGGCKVEGD EEQYGEAVAS VEGSSSITAV 180 GDMFGGVGAE SGVAMSSRYW IPTPAQILVG PVQFICHVCN KTFNRYNNMQ MHMWGHGREY 240 RKGPESLKGT QTLAMLKLPC YCCAAGCKNN VAHPRARPLK DFRTLQTHYK RKHGAKPFRC 300 RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGAHHL PVAESAAAAA 360 TTPADKDRII SFQR

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MGLRTCSAME GEVVAASPFF EWLKPPPRPA SSSSWSSSFS SSSSMASRDQ ETVVPGEDGG  60
GEIQEDHKSG MTCLPLLSML EEGNSKRHEH PVKEEIMSSA HAAGVVEPGV ELNIGLPVTG  120
SSAQEVTMEE DDEEEDDDDV GEEEMDEWKP MHGGCKVEGD EEQYGEAVAS VEGSSSITAV  180
GDMFGGVGAE SGVAMSSRYW IPTPAQILVG PVQFICHVCN KTFNRYNNMQ MHMWGHGREY  240
RKGPESLKGT QTLAMLKLPC YCCAAGCKNN VAHPRARPLK DFRTLQTHYK RKHGAKPFRC  300
RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGAHHL PVAESAAAAA  360
TTPADKDRII SFQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064334	0.0	AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625834.1	0.0	protein TRANSPARENT TESTA 1
TrEMBL	A0A0D3EWI2	0.0	A0A0D3EWI2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H6J1	0.0	A0A0E0H6J1_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0N595	0.0	A0A0E0N595_ORYRU; Uncharacterized protein
TrEMBL	B8ACI2	0.0	B8ACI2_ORYSI; Uncharacterized protein
TrEMBL	Q5N7D6	0.0	Q5N7D6_ORYSJ; Putative zinc finger protein
STRING	ORUFI01G41290.1	0.0	(Oryza rufipogon)
STRING	ONIVA04G25710.1	0.0	(Oryza nivara)
STRING	OBART01G37960.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	2e-92	WIP domain protein 4