PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G40590.1
Common NameqSH1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 612aa    MW: 65233.6 Da    PI: 7.8228
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G40590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-103904271954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  ORUFI01G40590.1 390 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 427
                      554459******************************88 PP
2BELL97.31.3e-31254323372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +e q kk+kL+s++eeV+krY+qy++q+q+v++sFe+vag  +a+p+++lAl+a+++hF+cLk +i +q+
  ORUFI01G40590.1 254 AEQQWKKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNAAPFAALALRAMAKHFKCLKSMILNQL 323
                      5899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-35179321IPR006563POX domain
PfamPF075261.5E-36184319IPR006563POX domain
PROSITE profilePS5007112.228368431IPR001356Homeobox domain
CDDcd000864.69E-13371432No hitNo description
SMARTSM003897.4E-11371435IPR001356Homeobox domain
SuperFamilySSF466894.06E-17373440IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28374435IPR009057Homeodomain-like
PfamPF059206.5E-19388427IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSSAAGGGGY GGGQGGGAEH HHHHHGHAGH LLLHHHPQHV AGAAVAAAAA AAGGQMYHVP  60
QHSRREKLRF PPDAGDSPPP HGHGHGHAPQ QQQQHGSWPP PPAFYSYASS SSSYSPHSPT  120
LAQAQLVAHG LAPPLPQIPT QNFSLSLSSA SSNPPPPQAQ PRRQLGGLAQ ATGPFGPFTG  180
YAAVLGRSRF LGPAEKLFEE ICDVGDAASH VDRTISDEGL LDADPMDGVD HDVVDHDLGG  240
ADRAAADAGP ISGAEQQWKK TKLISMMEEV CKRYRQYYQQ VQAVMASFET VAGFSNAAPF  300
AALALRAMAK HFKCLKSMIL NQLRNTSNKV AVKDGLNKEI AVFGLAGGSS GGAGLQRANS  360
ASAFGQPHNI WRPQRGLPER AVSVLRAWLF EHFLHPYPTD GDKQMLAKQT GLTRNQVSNW  420
FINARVRLWK PMVEEIHNLE MRQMHKHSVV DKGQHSVHHQ AQHSSQCSGN PSVPSDSHPG  480
QSSSITRNHN TAASQGFPDE LSQMSQSIQG QVSFAYNGLT SQHNIASPHH QHQQVGGVGI  540
GGGNGGVSLT LGLHQNNRVC IAEPLPAALP ANLAHRFGLE EVSDAYVMSS FGGQDRHFGK  600
EIGGHLLHDF VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-17377435563Homeobox protein Meis2
4xrm_B9e-17377435563Homeobox protein Meis2
4xrs_A7e-17377434158Homeobox protein Meis1
4xrs_B7e-17377434158Homeobox protein Meis1
5bng_A8e-17377435159Homeobox protein Meis2
5bng_B8e-17377435159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0713310.0AB071331.1 Oryza sativa Japonica Group qSH-1 mRNA for qSH-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641948.10.0BEL1-like homeodomain protein 9
TrEMBLD3KTK00.0D3KTK0_ORYRU; Putative transcription factor qSH-1
STRINGORUFI01G40590.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-57BEL1-like homeodomain 8