PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G40130.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 575aa    MW: 62585.4 Da    PI: 8.7426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G40130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-106798132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g WT+eEde l +av+ + g++Wk+I ++ +
  ORUFI01G40130.1 67 KGGWTPEEDETLRKAVEAYKGRNWKKIEQRYN 98
                     688************************99876 PP
2Myb_DNA-binding45.22.2e-14114153848
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      Ed++++d+vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
  ORUFI01G40130.1 114 EDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 153
                      9************************.*************97 PP
3Myb_DNA-binding60.44e-19159202146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  ORUFI01G40130.1 159 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 202
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.50462105IPR017877Myb-like domain
SuperFamilySSF466899.33E-76398IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-86496IPR009057Homeodomain-like
SMARTSM007170.3366112IPR001005SANT/Myb domain
PfamPF002494.9E-86798IPR001005SANT/Myb domain
PROSITE profilePS5129414.777103153IPR017930Myb domain
SMARTSM007179.7E-9113155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-23113161IPR009057Homeodomain-like
PfamPF002494.0E-13114153IPR001005SANT/Myb domain
CDDcd001671.03E-12114153No hitNo description
SuperFamilySSF466892.6E-29132214IPR009057Homeodomain-like
PROSITE profilePS5129428.34154208IPR017930Myb domain
SMARTSM007175.3E-18158206IPR001005SANT/Myb domain
PfamPF002496.0E-17159202IPR001005SANT/Myb domain
CDDcd001671.30E-14161204No hitNo description
Gene3DG3DSA:1.10.10.601.3E-22162207IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGGGLA QMSPPVSSSA NSISGLRRTS  60
GPIRRAKGGW TPEEDETLRK AVEAYKGRNW KKIEQRYNAC IDGKRFLILN LSKEDDQIID  120
LVKKYGPTKW SVIAKALPGR IGKQCRERWH NHLNPEIRKD AWTTEEEQAL INAHRIYGNK  180
WAEIAKVLPG RTDNSIKNHW NSSLRKKQDM YNTSNNMVVP KLLVHDKFKD KPKLMAMEGH  240
LDLNKAPIIN SKDQPGTAHR SNCSGFLSRS SLPTAQSLTS REASIVDGSA VTLVAQALES  300
DSVRGKGLEI DSVHEKGLEV NSAPDHTGNS WTIQLEAAPS KGEAELSLKN EARSLGPLCY  360
QIPNMEDVVP VSSSLFSDHL TGNHTSEHCG DDILSPAGCT TPPPTKGKLT SQLSVDSILK  420
SAANSFPGTP SILKRRKRDK STPVSASEMK ISGSNTDRFY TPMGMEPATA TPESFKTTSF  480
LSLGSLDGSV KSFDVSPQYR ARSKRMALTK TVEKQLDFSS DGLDTCGSEI LNSSCNNSQS  540
TLSITEAPKL KEKEHAVQLE NLTKNFAHTT NLDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-48662075158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-48662075158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434439RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402120.0FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616493.10.0transcription factor MYB3R-2
RefseqXP_015616500.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0E0N4S60.0A0A0E0N4S6_ORYRU; Uncharacterized protein
STRINGORUFI01G40130.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.27e-79myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]