PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G36580.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 489aa    MW: 50844.9 Da    PI: 9.6787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G36580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05248270223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ Cg+ Fs ++ L+ H  + H
  ORUFI01G36580.1 248 SCHRCGEQFSKWEALEAHHLSkH 270
                      7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.704247275IPR007087Zinc finger, C2H2
PROSITE patternPS000280249270IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-23272488No hitNo description
Gene3DG3DSA:3.90.228.103.2E-12296465IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA  60
AAAAGGGGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPERPPSCSP RSIGSSEFLN  120
PIAHEVVLST NSRCELKITG FGGCGGLAAA AAAGGGVLAS PHEADGDGAV VSSFVGTLRP  180
GTPGPGWSHG LQYSGSCRGS MRCTPPRSPN VLLDSRDAAA AGVTAHRASC EDAVKSFGKG  240
GGGGGGLSCH RCGEQFSKWE ALEAHHLSKH AVTELVEGDS SRKIVEIICR TSLLKSESSC  300
VRIERVFKVH NTQRTLARFE EYREAVKLKA SKLPKKHPRC LADGNELLRF HGATLSCALG  360
GAAGSSSLCA SDKCAVCRII RHGFSAKKEG KAGVGVFTTS TSGRAYESIE ASAGAVVGGD  420
DPAATRKALL VCRVIAGRVH KPLENLKEFA GQTGFDSLAG KVGPYSNIEE LYLLNPRALL  480
PCFVVICKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710140.0AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence.
GenBankAK1043110.0AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635096.10.0uncharacterized protein LOC4327046
TrEMBLA0A0E0N3F00.0A0A0E0N3F0_ORYRU; Uncharacterized protein
STRINGORUFI01G36580.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-138C2H2 family protein